View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9389_low_21 (Length: 347)

Name: NF9389_low_21
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9389_low_21
NF9389_low_21
[»] chr1 (3 HSPs)
chr1 (126-207)||(46537075-46537156)
chr1 (265-329)||(46537214-46537278)
chr1 (1-61)||(46536950-46537010)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 46537075 - 46537156
Alignment:
Q  126 actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537075 actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca 46537156  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 46537214 - 46537278
Alignment:
Q  265 tattaacacacactaacgtgcgcattccacctcatcaatatgtgcgtactgcgccaccctggtaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537214 tattaacacacactaacgtgcgcattccacctcatcaatatgtgcgtactgcgccaccctggtaa 46537278  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46536950 - 46537010
Alignment:
Q  1 tagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46536950 tagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc 46537010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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