View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9389_low_27 (Length: 279)

Name: NF9389_low_27
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9389_low_27
NF9389_low_27
[»] chr6 (2 HSPs)
chr6 (1-262)||(18459822-18460085)
chr6 (156-251)||(24133346-24133438)
[»] chr8 (5 HSPs)
chr8 (87-261)||(23710677-23710848)
chr8 (93-267)||(753988-754159)
chr8 (143-262)||(9173918-9174034)
chr8 (104-262)||(14822461-14822616)
chr8 (150-262)||(9710464-9710572)
[»] chr3 (4 HSPs)
chr3 (7-261)||(6162112-6162364)
chr3 (52-262)||(52972554-52972762)
chr3 (142-262)||(54586320-54586437)
chr3 (1-61)||(54586518-54586579)
[»] chr1 (6 HSPs)
chr1 (51-262)||(50515252-50515460)
chr1 (142-262)||(44713298-44713415)
chr1 (52-262)||(45910520-45910727)
chr1 (205-250)||(16768021-16768066)
chr1 (211-251)||(10548339-10548379)
chr1 (205-262)||(6851381-6851438)
[»] chr2 (5 HSPs)
chr2 (51-262)||(38619165-38619373)
chr2 (1-262)||(17312586-17312844)
chr2 (1-262)||(9635351-9635612)
chr2 (205-251)||(19991633-19991679)
chr2 (205-251)||(26262693-26262739)
[»] chr7 (2 HSPs)
chr7 (89-262)||(19215449-19215619)
chr7 (1-252)||(41257417-41257665)
[»] chr5 (5 HSPs)
chr5 (89-262)||(20236322-20236491)
chr5 (150-262)||(23352198-23352307)
chr5 (1-262)||(25761158-25761416)
chr5 (1-262)||(38965566-38965824)
chr5 (52-251)||(13850826-13851022)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 18459822 - 18460085
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtcaaaa-atgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||| |||||||| | ||| |||||| |||||||    
T  18459822 tggggcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccgaaattcaaaatccg 18459921  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgcc-nnnnnnncgaatgggggaa 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        | ||||||||||    
T  18459922 gaacgcatgaatgcagtccggatttgaaattccagaacgtttcagtacagatcatatgacgtgatcaaaaggaaatcgccaaaaaaaacaaatgggggaa 18460021  T
Q  199 ggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18460022 ggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 18460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 24133346 - 24133438
Alignment:
Q  156 tgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    |||| |||||||||||||| ||||       |||||| ||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||    
T  24133346 tgacatgatcaaaaggaaagcgcctagaaatcgaatgagggaaggtttat---atacacattacctttgaattcagtcgaaaatgatgatgttaac 24133438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 23710677 - 23710848
Alignment:
Q  87 aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn 186  Q
    |||||||||||||||||||||||||||||| || |||| | ||||  ||||||| ||||| | ||||||||||||||||||||||||||||||           
T  23710677 aattcgaaatccggaacgcatgaatgcagtccgaatttcatattctggaacgttacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaa 23710776  T
Q  187 cgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat 261  Q
    |||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23710777 cgaatgggggaaggt---ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat 23710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 267
Target Start/End: Complemental strand, 754159 - 753988
Alignment:
Q  93 aaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatg 192  Q
    ||||| |||||||||||||||||| ||||||| | ||||  ||||| | ||||| ||||||||||| ||||||||||||||||||||       ||||||    
T  754159 aaatctggaacgcatgaatgcagtccggatttcatattctggaacggtacagtacagatcatatgaagtgatcaaaaggaaatcgcctaaaaaacgaatg 754060  T
Q  193 ggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatgtccat 267  Q
    |||||||||   |||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  754059 ggggaaggt---ttatatacacattatctttgcattcagtcaaaaatgatgatgtcaaccccccttgatggccat 753988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 262
Target Start/End: Original strand, 9173918 - 9174034
Alignment:
Q  143 agtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgat 242  Q
    |||| ||||||||||||||||||||||| ||||| ||       |||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  9173918 agtacagatcatatgacgtgatcaaaagaaaatctcctaaaaaacgaatgggggaaggtttat---atacacattacctttgcattcagtcaaaaatgat 9174014  T
Q  243 gatgttaacctcccttgatg 262  Q
    |||||||||| || ||||||    
T  9174015 gatgttaaccccctttgatg 9174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 14822616 - 14822461
Alignment:
Q  104 gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt 203  Q
    ||||||||||||| ||||||| |  |||| ||| ||| |||||  |||||||||| ||||| |||||||||||||        |||||||||||||||||    
T  14822616 gcatgaatgcagtccggatttaattttccggaatgttccagtacggatcatatgatgtgattaaaaggaaatcgcttaaaattcgaatgggggaaggttt 14822517  T
Q  204 attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||   ||||||||||||||| |||| || | |||||||||||||||||| |||||||||    
T  14822516 at---atacacattacctttacatttagacaaaaatgatgatgttaaccccccttgatg 14822461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 9710464 - 9710572
Alignment:
Q  150 atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta 249  Q
    |||||||||| |||||||||| |||| |||        |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  9710464 atcatatgacatgatcaaaagaaaattgcctaaaaaatgaatgggggaaggtt----atatacacattacctttgcattcagtcgaaaatgatgatgtta 9710559  T
Q  250 acctcccttgatg 262  Q
    ||| |||||||||    
T  9710560 accccccttgatg 9710572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 6162112 - 6162364
Alignment:
Q  7 atcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgc 105  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||  | |||  ||| |||||||| ||||||    
T  6162112 atcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaatccagaacgc 6162211  T
Q  106 atgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttat 205  Q
    ||||||||||  ||||||| | ||||| ||||  | || |  | ||||||  |||||||||||||  |||||||       ||| | ||| |||||   |    
T  6162212 atgaatgcagaccggatttaacattccggaacagtacaatgaatatcatacaacgtgatcaaaagttaatcgcctaaaaatcgactagggaaaggt---t 6162308  T
Q  206 tatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat 261  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  6162309 tatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat 6162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 52972554 - 52972762
Alignment:
Q  52 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttc-agtataga 150  Q
    ||||||||||||||||||  | ||||   ||||| | ||| ||||||||||||||||||| |||| | ||||| | | ||| |||| | |  |||| | |    
T  52972554 aaaatgaacacagtttctgtattggtgcagtccagatttcaaaatccggaacgcatgaatccagtccagattttacagtcc-gaacatgtagagtacaaa 52972652  T
Q  151 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaat-gggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta 249  Q
    ||||||||||||||||||| |||||||||       ||||| ||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||    
T  52972653 tcatatgacgtgatcaaaaagaaatcgcctaaaaaacgaatggggggaaggt---ttatacacacattacctttgcattcagtcgaaaatgatgatgtta 52972749  T
Q  250 acctcccttgatg 262  Q
    ||| |||||||||    
T  52972750 accccccttgatg 52972762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 54586437 - 54586320
Alignment:
Q  142 cagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatga 241  Q
    ||||| ||||| |||||||||||||||||||||| |||       |||||||| |||  |||||   ||||||| ||||||||||||||| |||||||||    
T  54586437 cagtacagatcgtatgacgtgatcaaaaggaaattgcctaaaaaacgaatgggagaaattttat---atacacactacctttgcattcagacgaaaatga 54586341  T
Q  242 tgatgttaacctcccttgatg 262  Q
    ||||||||||| |||||||||    
T  54586340 tgatgttaaccccccttgatg 54586320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 54586579 - 54586518
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaaca 61  Q
    |||||||||||  ||||||||| | |||||||| | ||||||||||||||| ||||||||||    
T  54586579 tggggcatcaaccggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaaca 54586518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 50515460 - 50515252
Alignment:
Q  51 aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtataga 150  Q
    ||||||||||||||||| |  |||||| | ||||  | |||||| ||||||| |||||||| |||| ||||||  | | ||| ||| | | ||||| |||    
T  50515460 aaaaatgaacacagtttttgtactggtgtagtccggatttcgaattccggaaagcatgaatccagtccggattgcatagtccggaaaggtacagtacaga 50515361  T
Q  151 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaa 250  Q
    |||||||||||||||||||||||||||||       | ||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  50515360 tcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaatggggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaa 50515264  T
Q  251 cctcccttgatg 262  Q
    || |||||||||    
T  50515263 ccccccttgatg 50515252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 44713298 - 44713415
Alignment:
Q  142 cagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatga 241  Q
    ||||| ||||||||||||||||||||||||||||||||       ||||||||| |||||||||   ||||||||||||||||||||||  |||||||||    
T  44713298 cagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcaaccgaaaatga 44713394  T
Q  242 tgatgttaacctcccttgatg 262  Q
    ||||||||||| |||||||||    
T  44713395 tgatgttaaccccccttgatg 44713415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 45910520 - 45910727
Alignment:
Q  52 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagat 151  Q
    ||||||||||||||||||  ||||||   |||| || |||||| ||| |||||||||||| |||| ||||||  | | ||| ||| | | ||||| ||||    
T  45910520 aaaatgaacacagtttctgtactggtgcagtccgaatttcgaactccagaacgcatgaatccagtccggattgcatagtccggaaaggtacagtacagat 45910619  T
Q  152 catatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    |||||||| |||||||||||||||| ||        |||||||| |||||||||   ||| ||||||||||||||||||||| |||||||||||| ||||    
T  45910620 catatgacatgatcaaaaggaaatcacctaaaaaatgaatggggaaaggtttat---atatacattacctttgcattcagtcaaaaatgatgatgctaac 45910716  T
Q  252 ctcccttgatg 262  Q
    | |||||||||    
T  45910717 cccccttgatg 45910727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 16768021 - 16768066
Alignment:
Q  205 ttatatacacattacctttgcattcagtcgaaaatgatgatgttaa 250  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16768021 ttatatacacattacctttgcattcagtcgagaatgatgatgttaa 16768066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 10548379 - 10548339
Alignment:
Q  211 acacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10548379 acacattacctttgcattcagtcgaaaatgatgatgttaac 10548339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 6851381 - 6851438
Alignment:
Q  205 ttatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||  |||||||||    
T  6851381 ttatatacacattacctttgcagtcagacgaaaatgatgatgtttacaccccttgatg 6851438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 38619373 - 38619165
Alignment:
Q  51 aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtataga 150  Q
    |||||||||||||||||||  ||||||   ||| | | ||||||||||  ||||||||||| |||| ||||||  | | ||| ||| | | ||||| |||    
T  38619373 aaaaatgaacacagtttctgtactggtgcagtctagatttcgaaatccataacgcatgaatccagtccggattgcatagtccggaaaggtacagtacaga 38619274  T
Q  151 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaa 250  Q
    |||||||||||||||||||||||||||||       | ||| ||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  38619273 tcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaattgggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaa 38619177  T
Q  251 cctcccttgatg 262  Q
    || |||||||||    
T  38619176 ccccccttgatg 38619165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 17312586 - 17312844
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    |||||||||||   |||||||| |  ||||||| ||||| ||||| ||||| ||||||||||||||||||  ||||||   ||||  | ||||||||| |    
T  17312586 tggggcatcaaccagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttctgtactggtgcagtccggatttcgaaatctg 17312684  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 199  Q
     ||| | ||||  |||||||||||| | | ||  || || |  |||| | ||||||||||||||||||||||||||||||       |||||||| ||||    
T  17312685 aaacacgtgaacccagttcggatttcagagtctggaccggtagagtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggagaag 17312784  T
Q  200 gtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  17312785 gtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaaccccctttgatg 17312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9635612 - 9635351
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    ||||||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||| |||||||| |  |||||| |||| |  | |   ||||| |    
T  9635612 tggggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagtttttgtactggtgttgttcggattaaaaaatctg 9635513  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 199  Q
     || ||||||||||||| | ||||| |  || |  |  | | ||||| ||||||||||||||||||||||||||| ||||       | |||  ||||||    
T  9635512 aaatgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctaaaattcaaataagggaag 9635413  T
Q  200 gtttattatatacacattacctttgcattcagtcgaaaatgatga--tgttaacctcccttgatg 262  Q
    ||   |||||||||||||| ||||||| ||||  |||||||||||  ||||||||||||||||||    
T  9635412 gt---ttatatacacattatctttgcactcagatgaaaatgatgatgtgttaacctcccttgatg 9635351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 19991633 - 19991679
Alignment:
Q  205 ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  19991633 ttatatacacattacctttgcattcattcgaaaatgatgatgttaac 19991679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 26262739 - 26262693
Alignment:
Q  205 ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||    
T  26262739 ttatatacacattacctttgcattcagacaaaaatgatgttgttaac 26262693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 19215619 - 19215449
Alignment:
Q  89 ttcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncg 188  Q
    |||||| |||||||||||||||| |||| ||||||  | | ||| ||| | | || || ||||||||||||||||||||||| |||| |||       |     
T  19215619 ttcgaactccggaacgcatgaatccagtccggattgcatagtcctgaaaggtacaatacagatcatatgacgtgatcaaaagaaaattgcctaaaaaact 19215520  T
Q  189 aatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19215519 aatgggggaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg 19215449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 41257417 - 41257665
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    |||||||||||  ||||||||| |  ||||||| ||||| | ||| ||||| ||||| ||||||||||||  ||||||   ||||  | ||||||||||     
T  41257417 tggggcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccggatttcgaaatcca 41257515  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 199  Q
    |||||||||||| || | | ||||  | | |||  || | | ||||| | ||||||||||||||||||||||||||||||       ||||||||| |||    
T  41257516 gaacgcatgaatccaatccagattgcatagtccgaaaaggtacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaag 41257615  T
Q  200 gtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacc 252  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  41257616 gtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaacc 41257665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 20236322 - 20236491
Alignment:
Q  89 ttcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncg 188  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||| || |     | || | ||||||||||||||||||||||||||||||       |     
T  20236322 ttcgaaatccggaacgcatgaatccagttcggatttcaaagtccggatctgaagattacatatcatatgacgtgatcaaaaggaaatcgcctaaaaa-ca 20236420  T
Q  189 aatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||| |||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  20236421 aatcggggaaggtttat---atacacattaccttagcattcagtcgaaaatgatgatgttaaccccccttgatg 20236491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 23352198 - 23352307
Alignment:
Q  150 atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta 249  Q
    |||||||||||||||||||||||||| |||       ||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  23352198 atcatatgacgtgatcaaaaggaaattgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgtta 23352294  T
Q  250 acctcccttgatg 262  Q
    ||| |||||||||    
T  23352295 accgcccttgatg 23352307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 25761416 - 25761158
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    |||||||||||  ||||||||| |  ||||||| ||||| | ||| ||||| |||||||||||||||| |  ||||||   ||||  | |||||| ||||    
T  25761416 tggggcatcaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccggatttcgaactccg 25761318  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 199  Q
    |||||||||||| ||||  |||||  | | ||| ||| | | ||||| | ||||||||||||||||||||| |||| |||         ||||||| |||    
T  25761317 gaacgcatgaatccagtctggattgcatagtccggaaaggtacagtacatatcatatgacgtgatcaaaagaaaatagcctaaaaaatcaatggggaaag 25761218  T
Q  200 gtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||||||   ||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  25761217 gtttat---atacacattacctttgcattcagtcaaaaatgatgatgttaaccccccttgatg 25761158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 38965824 - 38965566
Alignment:
Q  1 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 99  Q
    |||||||||||  ||||||||| | | |||||  ||||| ||||| ||||| ||||||||||||||||||  |||||| | ||||  | ||||||||||     
T  38965824 tggggcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatttcgaaatcca 38965725  T
Q  100 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 199  Q
    ||| ||||||||| ||| |||| ||    |||| ||||  | ||||| | |||||||||| |||||||||| ||||||||       ||||||| |||||    
T  38965724 gaatgcatgaatgtagtccggaattcgttttccggaacagt-cagtacatatcatatgacatgatcaaaagaaaatcgcctaaaaaacgaatggaggaag 38965626  T
Q  200 gtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 262  Q
    ||||||   ||||||||||| |||| |||||| |||||||||||||||||| | |||||||||    
T  38965625 gtttat---atacacattacatttgaattcagacgaaaatgatgatgttaatcccccttgatg 38965566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 251
Target Start/End: Original strand, 13850826 - 13851022
Alignment:
Q  52 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagat 151  Q
    ||||||||||||||||||  ||||||   ||||  | | |||| |||||||  ||||||| |||| ||||||  | | ||| ||| | | ||||| | ||    
T  13850826 aaaatgaacacagtttctgtactggtgcagtccggattacgaactccggaaaccatgaatccagtgcggattgcatagtccggaaaggtacagtacaaat 13850925  T
Q  152 catatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac 251  Q
    ||||||||||||||||||||||||||||       |||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  13850926 catatgacgtgatcaaaaggaaatcgcctaaaaa-cgaatgggggaaaggtt--tatatacacattacctttgcattcagtcgaaaatgatgatgttaac 13851022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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