View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_32 (Length: 250)
Name: NF9389_low_32
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_32 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 47345391 - 47345607
Alignment:
| Q |
8 |
gagcagagatcgtgtttattagataggagacaaaatattnnnnnnnnnnttgctagatctattcttttcttttttatcattctttacaaagttaaattgt |
107 |
Q |
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| T |
47345391 |
gagcagagatcgcgtttattagataggagacaaaatat--aaaaaaaaattgctagatctattcttttcttttttatcattctttacaaagttaaattgt |
47345488 |
T |
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| Q |
108 |
ttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtgatacatgaaatcttttttctactatcattaatgaatatgccacatc |
207 |
Q |
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| T |
47345489 |
ttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaatacatgaaatcttcttt---ctatcattaatgaatgtgccacatc |
47345585 |
T |
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| Q |
208 |
actacaagaagaggaggatcaa |
229 |
Q |
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|||| ||||||||||||||||| |
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| T |
47345586 |
actaaaagaagaggaggatcaa |
47345607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 3798166 - 3798071
Alignment:
| Q |
8 |
gagcagagatcgtgtttattagataggagacaaaatattnnnnnnnnnntt-gctagatctattcttttcttttttatcattctttacaaagttaa |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3798166 |
gagcagagatcgcgtttattagataggagacaaaatataaaaaaaaaaatttgctagatctattcttttcttttttatcattctttacaaagttaa |
3798071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 180
Target Start/End: Complemental strand, 13384 - 13268
Alignment:
| Q |
63 |
gatctattcttttcttttttatcattctttacaaagttaaattgtttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtga |
162 |
Q |
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| T |
13384 |
gatctattcttttctttattatcattctttacatagttaaattttttaatatttccatgccatgtcatcggtggtagaaaagggtgtaccaaaagagtgg |
13285 |
T |
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| Q |
163 |
tacatgaaatcttttttc |
180 |
Q |
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|||||| ||||||||||| |
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| T |
13284 |
tacatg-aatcttttttc |
13268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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