View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_38 (Length: 242)
Name: NF9389_low_38
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_38 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 177661 - 177891
Alignment:
| Q |
1 |
ctaccggtagctataggcactatcaatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtg |
100 |
Q |
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| T |
177661 |
ctaccggtagctataggcactatcaatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtg |
177760 |
T |
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| Q |
101 |
atttatgtatcaagcggactaggatgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataa |
200 |
Q |
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| T |
177761 |
atttatgtatcaagcggactaggatgaccttgcaattggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataa |
177860 |
T |
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| Q |
201 |
atttgtattcccggcggattttgtagtgatg |
231 |
Q |
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| T |
177861 |
atttgtattcccggcggattttgtagtgatg |
177891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 20171287 - 20171512
Alignment:
| Q |
6 |
ggtagctataggcactatcaatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgattta |
105 |
Q |
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|||||||||||||||||| ||||||| || |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||||| || |
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| T |
20171287 |
ggtagctataggcactattcatgttggcaaatcactacttgatcttggctcaagcatcaacctcatgcctttgtctgttgccaaaagagttggtgacttg |
20171386 |
T |
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| Q |
106 |
tgtatcaagcggactaggatgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttg |
205 |
Q |
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| T |
20171387 |
tgtattaagcggactaggatgactttgcaattggccgataaatcctacacaaaaccattgggaatagcggaggatgtgctagtgaaagttgataaatttt |
20171486 |
T |
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| Q |
206 |
tattcccggcggattttgtagtgatg |
231 |
Q |
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| T |
20171487 |
tcttttcggtggattttgtggtgatg |
20171512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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