View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_39 (Length: 239)
Name: NF9389_low_39
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 4284576 - 4284359
Alignment:
| Q |
6 |
tgctaggtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaa |
105 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284576 |
tgctaggtgaagctttggaaactttaaaagatgtagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaa |
4284477 |
T |
|
| Q |
106 |
agcaattggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4284476 |
agcaattggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccaaaaaaagttgaaatggtttcaatagatagaact |
4284377 |
T |
|
| Q |
206 |
ggtgccttttgtctttct |
223 |
Q |
| |
|
|||||||||||||||||| |
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| T |
4284376 |
ggtgccttttgtctttct |
4284359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 4257829 - 4257615
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4257829 |
gtgaagctttggaaactttaaaagatggagtgttgaatggagctgaaaaattggcgtcatcgttacttggagatcttgcaattgctgatgttaaagcaat |
4257730 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaacc---nnnnnnngttgaaatggtttcaatagatagaactggt |
208 |
Q |
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| T |
4257729 |
tggtgctgctggttcacctaaatttgaggattatagtactgattttggttgtggaaaaccaaagaaattagttgaaatggtttctatagatagaactggt |
4257630 |
T |
|
| Q |
209 |
gccttttgtctttct |
223 |
Q |
| |
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| ||||||||||||| |
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| T |
4257629 |
gacttttgtctttct |
4257615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 4297864 - 4297653
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||| |||||||| ||||||||| ||||||||||||||| |||| |
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| T |
4297864 |
gtgaagctttggaaactttaaaagatggagtgttgactggagctgaaaattggtcttcattgttacttgaaggtcttgccattgctgatgttaaaacaat |
4297765 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaactggtgcc |
211 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||| |
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| T |
4297764 |
tggtactgctggttcacctaaatttgaggtttatagtactgattttggatgtggaaaaccaaagaaagttgaaatggtttctatagatagaattggtgcc |
4297665 |
T |
|
| Q |
212 |
ttttgtctttct |
223 |
Q |
| |
|
|||||||||||| |
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| T |
4297664 |
ttttgtctttct |
4297653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 4260908 - 4261119
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| |||||||| ||||||||| || || ||||||||| || |
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| T |
4260908 |
gtgaagctttggaaactataaaagatggagtgttgaatggagctgaaaattggtcttcattgttacttgaaggtcttgccatggccgatgttaaaatgat |
4261007 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaactggtgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4261008 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggatgtggaaaaccaaaaaaagttgaaatggtttcaatagatagaactggtgct |
4261107 |
T |
|
| Q |
212 |
ttttgtctttct |
223 |
Q |
| |
|
|||||||||||| |
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|
| T |
4261108 |
ttttgtctttct |
4261119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 4289269 - 4289058
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| |||||||| ||||||||| || | ||||||||| || |
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| T |
4289269 |
gtgaagctttggaaactataaaagatggagtgttgaatggagctgaaaattggtcttcattgttacttgaaggtcttgccatgaccgatgttaaaatgat |
4289170 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaactggtgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4289169 |
tggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgcc |
4289070 |
T |
|
| Q |
212 |
ttttgtctttct |
223 |
Q |
| |
|
|||||||||||| |
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|
| T |
4289069 |
ttttgtctttct |
4289058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 4266454 - 4266652
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||||| | ||||||||||||||| ||| |
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|
| T |
4266454 |
gtgaagctttggaaactttaaaagatggagtgttgaatggagctgaaaattggtcttcatggttacttgatggtcttactattgctgatgttaaaacaac |
4266553 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaactggtgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
4266554 |
tggtgctgctggttcacctaaatttgaggtttatagtactgactttggttgtggaaaaccaaagaaagttgaaatggtttctatagatagaactggtgc |
4266652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 4255565 - 4255356
Alignment:
| Q |
12 |
gtgaagctttggaaactttaaaagatggagtgttaaatggagctgaaaatatgtgttcatcgttacttggaggtcttgcaattgctgatgttaaagcaat |
111 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||| ||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
4255565 |
gtgaaactttggaaacattaaaagatgtagtgttgaatggagctgaaaattggtcttcatggttacttgaaggtcttgcaattgctgatgttaaaacaat |
4255466 |
T |
|
| Q |
112 |
tggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccnnnnnnngttgaaatggtttcaatagatagaactggtgcc |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||| |||||||||| |
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| T |
4255465 |
tggttctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccgaagaaagtcgaaattgtttctataaataaaactggtgcc |
4255366 |
T |
|
| Q |
212 |
ttttgtcttt |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
4255365 |
ttttgtcttt |
4255356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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