View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9389_low_42 (Length: 230)
Name: NF9389_low_42
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 16208894 - 16209029
Alignment:
| Q |
79 |
tagttcgagaaagtatagcataatccctccaacctataaagaaaaccaaccacaccccttaatccttcgtagtnnnnnnnnttcaactcatagctacctt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16208894 |
tagttcgagaaagtatagcataatccctccaacctataaagaaaaccaaccacaccccttaatccttcgtagtaaaaaaaattcaactcatagctacctt |
16208993 |
T |
|
| Q |
179 |
atagttatactactcttccttctctccctctatttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16208994 |
atagttatactactcttccttctctccctctatttt |
16209029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 16208832 - 16208862
Alignment:
| Q |
17 |
caaagtgttgcctccatgtcacgctcaaaaa |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16208832 |
caaagtgttgcctccatgtcacgctcaaaaa |
16208862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University