View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9389_low_5 (Length: 517)
Name: NF9389_low_5
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_5 |
 |  |
|
| [»] chr1 (6 HSPs) |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 517
Target Start/End: Complemental strand, 5446995 - 5446506
Alignment:
| Q |
16 |
acatcaatgtgggtatgcattttgttggagaaagagatagaaaaagattgatatcatatttgcaaaaaataagattgacatcatagatatgataaaatga |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5446995 |
acataaatgtgggtatgcattttgttggagaaagagatagaaaaagattgatatcatatttgcaaaaaataagattgacatcatagatat------atga |
5446902 |
T |
 |
| Q |
116 |
tgatgtgataaagagagaaagaaagagaatatgaaacctttgttggatttacgagtaaaggtcatctctatttataaaaataaatggagattgtcatgag |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
5446901 |
taatgtgataaagagagaaagaaagagaatatgaaacctttgttggatttacgagtaaaggtcatctctatttataaaaataaatggagattgtcgtaag |
5446802 |
T |
 |
| Q |
216 |
aaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaa |
315 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5446801 |
aaaagagatagacacaaaaaataaatggttgatctcatcattaaatgaatttcaccgttattaatcatttttaagttttattgtgtttttatctctctaa |
5446702 |
T |
 |
| Q |
316 |
ataaaagaaatggagaagattctaaatagagaggatcctaactcattatatttacaaaacagtaaaaggtatagcaaaattgtggagagttnnnnnnnnn |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5446701 |
ataaaaaaaatggagaagattctaaatagagaggatcctaactc-----atttacaaaagagtaaaaggtatagcaaaattgtggagagtt-aaaaaata |
5446608 |
T |
 |
| Q |
416 |
nnnnnggaaattttagtatatttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgacaaaaattcatgtttttatccgatctctt |
515 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
5446607 |
aaaaaggaaattttagtatttttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgataaaaattcatgtttttatccgatcactt |
5446508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 3885884 - 3885852
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcat |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
3885884 |
tctctatttataaaaataaacggagattgtcat |
3885852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 9380125 - 9380177
Alignment:
| Q |
282 |
attttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga |
334 |
Q |
| |
|
||||| ||| |||||||||||||||||| | |||||| |||||||| |||||| |
|
|
| T |
9380125 |
atttttaagctttattgtgtttttatctttttaaatagaagaaatgtagaaga |
9380177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 34599389 - 34599333
Alignment:
| Q |
303 |
tttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||| ||| ||||||||||| |
|
|
| T |
34599389 |
tttatctctctaaataaaagaaataaagaaaattctaaatgaagacgatcctaactc |
34599333 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 50616914 - 50616838
Alignment:
| Q |
275 |
attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat |
351 |
Q |
| |
|
|||||| ||||||||| |||| ||||| ||||| | || |||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
50616914 |
attaattattttaaagctttagtgtgtctttatttttccaaattgaagaaatgaataagattctaaatggagaggat |
50616838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 50624741 - 50624665
Alignment:
| Q |
275 |
attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat |
351 |
Q |
| |
|
|||||| ||||||||| |||| ||||| ||||| | || |||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
50624741 |
attaattattttaaagctttagtgtgtctttatttttccaaattgaagaaatgaataagattctaaatggagaggat |
50624665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 3405588 - 3405674
Alignment:
| Q |
273 |
ttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
|||||||| ||||| || |||||||||| |||||||| | ||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
3405588 |
ttattaattattttcaaattttattgtgattttatctcttcaaataaaagaaatggagaacatcctaaatagagaggatcctaactc |
3405674 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 1193761 - 1193842
Alignment:
| Q |
275 |
attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaa |
356 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| |||||||| || |||| ||||||||||| ||||||| |||||||| |
|
|
| T |
1193761 |
attaattattttaaatttttattgtgtctttatctctctaaatagaaacaatgaagaagattctagatagagatgatcctaa |
1193842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 2345631 - 2345692
Alignment:
| Q |
291 |
ttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatc |
352 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
2345631 |
ttttattgtgtttttatctttctaaatagaagaatctgagaagattcgtaatagagaggatc |
2345692 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 46802442 - 46802479
Alignment:
| Q |
323 |
aaatggagaagattctaaatagagaggatcctaactca |
360 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46802442 |
aaatggagaagatcctaaatggagaggatcctaactca |
46802479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 20400097 - 20400009
Alignment:
| Q |
241 |
tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatgga |
329 |
Q |
| |
|
|||| |||||||||||||||||| | ||| | |||||| ||||| ||| ||| || ||| ||||||||| |||||| |||||||||| |
|
|
| T |
20400097 |
tggtgggtcttatcattaaatgagtcacacgatcattaattatttttaagattttttatgtctttatctgtttaaatagaagaaatgga |
20400009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 43222232 - 43222054
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcatgagaaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaa |
279 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| || ||| | ||||| |
|
|
| T |
43222232 |
tctccatttataaaaataaatggagattgtcattatgaaagagatagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaa |
43222133 |
T |
 |
| Q |
280 |
tcatttt-aaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaact |
358 |
Q |
| |
|
| ||||| ||| |||||| |||| ||||||| ||| ||| ||| |||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
43222132 |
ttattttcaaaattttat-gtgtctttatctctctgaatgaaataaatggagcagagtttaaatagagagaatcctaact |
43222054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 4161251 - 4161334
Alignment:
| Q |
276 |
ttaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||||| | |||||| |||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
4161251 |
ttaattatttttaaattttattgtgtctttatctctttaaatagaagaaatggagaagattcataatgaaaaggatcctaactc |
4161334 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 26452569 - 26452493
Alignment:
| Q |
275 |
attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat |
351 |
Q |
| |
|
|||||| ||||| ||||| |||||||||| ||||| || |||| ||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
26452569 |
attaattatttttaagttatattgtgtttatatctctcaaaatgaaaaaaagggagaagatacaaaatagagaggat |
26452493 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 14733660 - 14733610
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcatgagaaaagagattgacac |
230 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| || |||||||| ||||| |
|
|
| T |
14733660 |
tctccatttataaaaataaatgaagattgtcattaggaaagagatagacac |
14733610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 35650424 - 35650246
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcatgagaaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaa |
279 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || |||||| |||| ||||| |||| |||| ||| |||||||||||||||| | ||||| |
|
|
| T |
35650424 |
tctccatttattaaaataaatggagattgcaattagaaaaaagatagacacaaaaaataggtggtgggtcctattattaaatgaatttcaccatcattaa |
35650325 |
T |
 |
| Q |
280 |
tcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaact |
358 |
Q |
| |
|
| ||||| || |||| || ||||| ||||| | |||| |||||||||||| ||| |||||| || |||||| ||||| |
|
|
| T |
35650324 |
ttatttttaaatttttttatgtttatatctcttcaaatgaaagaaatggaggagagactaaatggataggatcttaact |
35650246 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 41072979 - 41073072
Alignment:
| Q |
241 |
tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga |
334 |
Q |
| |
|
|||| |||| |||||||||||| || ||||| | |||||| ||||| ||| ||| |||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
41072979 |
tggtgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatgaaagaaatggagaaga |
41073072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 17371439 - 17371362
Alignment:
| Q |
426 |
ttttagtatatttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgacaaaaattcatgttttt |
503 |
Q |
| |
|
|||| |||| ||||||||||| || |||||||||||||||||||| | ||||| ||| ||||| | ||||||||||| |
|
|
| T |
17371439 |
ttttggtatttttgatagtttgtattttggataaaaagttatcccatagtttaatgagagacaagatttcatgttttt |
17371362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 19077139 - 19077220
Alignment:
| Q |
275 |
attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaa |
356 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || |||| ||||||| ||||| || ||||| |||||||| |||| |
|
|
| T |
19077139 |
attaattattttaaagttttattgtgtttttacctctccaaatgaaagaaacagagaatatgataaatggagaggattctaa |
19077220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 373194 - 373287
Alignment:
| Q |
241 |
tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga |
334 |
Q |
| |
|
|||| |||| ||| ||||||||||| ||| |||||||| ||||| ||| ||| |||| | ||||||| ||||||| ||||||||||||||| |
|
|
| T |
373194 |
tggtgggtcatattattaaatgaatcccaccattattaattatttttaagattttttgtatctttatctttctaaatggaagaaatggagaaga |
373287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 43624345 - 43624395
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcatgagaaaagagattgacac |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
43624345 |
tctctatttataaaaataaatggagattgtcattataaaagagatagacac |
43624395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 32577566 - 32577449
Alignment:
| Q |
241 |
tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaa |
340 |
Q |
| |
|
|||| |||| ||||||||||||| || ||| | |||||| |||| ||| ||| |||||| ||||||| || ||||| ||||||||||||||| | ||| |
|
|
| T |
32577566 |
tggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagattt-ttgtgtctttatctctccaaatagaagaaatggagaagagtttaa |
32577468 |
T |
 |
| Q |
341 |
atagagaggatcctaactc |
359 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
32577467 |
atggaaaggatcctaactc |
32577449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 37666394 - 37666353
Alignment:
| Q |
180 |
tctctatttataaaaataaatggagattgtcatgagaaaaga |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
37666394 |
tctctatttataaaaataaatagagattgtcattagaaaaga |
37666353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 47750382 - 47750342
Alignment:
| Q |
292 |
tttattgtgtttttatctgtctaaataaaagaaatggagaa |
332 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
47750382 |
tttattgtgtttttatctctctaaatagaagaaatggagaa |
47750342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 40140171 - 40140229
Alignment:
| Q |
299 |
tgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
40140171 |
tgtttttatctctctaaataaaagaaat-taaaagatactaaatagaga-gatcctaactc |
40140229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 1514850 - 1514818
Alignment:
| Q |
177 |
tcatctctatttataaaaataaatggagattgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1514850 |
tcatctctatttataaaaataaatggagattgt |
1514818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 28862992 - 28862924
Alignment:
| Q |
291 |
ttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
||||||| ||||||||| | ||||||| |||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
28862992 |
ttttattatgtttttatttctctaaatggaagaaatggagaggacactaaatagagaagatcctaactc |
28862924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 27095992 - 27095940
Alignment:
| Q |
299 |
tgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat |
351 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| | | ||||| |||||||| |
|
|
| T |
27095992 |
tgtttttatctctctaaatgaaagaaatggagaatagtttaaatcgagaggat |
27095940 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 3805958 - 3805895
Alignment:
| Q |
296 |
ttgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc |
359 |
Q |
| |
|
|||||| |||||||||| |||||||| |||| |||| ||| ||||||||||||||| |||||| |
|
|
| T |
3805958 |
ttgtgtctttatctgtccaaataaaaaaaatagagatgatcataaatagagaggatcttaactc |
3805895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 6148910 - 6148951
Alignment:
| Q |
162 |
atttacgagtaaaggtcatctctatttataaaaataaatgga |
203 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6148910 |
atttacgggtaaagatcatctccatttataaaaataaatgga |
6148951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 21492876 - 21492831
Alignment:
| Q |
185 |
atttataaaaataaatggagattgtcatgagaaaagagattgacac |
230 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||| ||||| |
|
|
| T |
21492876 |
atttataaaaataaatggagattgccattaggaaagagatagacac |
21492831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 10659813 - 10659745
Alignment:
| Q |
436 |
tttgatagtttatactttggataaaaagttatcccgtggttt-agtgaatgacaaaaattcatgttttt |
503 |
Q |
| |
|
||||||||| ||||||||||| |||| || ||||||| ||| |||||||||||| |||| |||||||| |
|
|
| T |
10659813 |
tttgatagtctatactttggaaaaaatcttgtcccgtgatttaagtgaatgacaagaatttatgttttt |
10659745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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