View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9389_low_6 (Length: 517)

Name: NF9389_low_6
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9389_low_6
NF9389_low_6
[»] chr1 (6 HSPs)
chr1 (16-517)||(5446506-5446995)
chr1 (180-212)||(3885852-3885884)
chr1 (282-334)||(9380125-9380177)
chr1 (303-359)||(34599333-34599389)
chr1 (275-351)||(50616838-50616914)
chr1 (275-351)||(50624665-50624741)
[»] chr7 (5 HSPs)
chr7 (273-359)||(3405588-3405674)
chr7 (275-356)||(1193761-1193842)
chr7 (291-352)||(2345631-2345692)
chr7 (323-360)||(46802442-46802479)
chr7 (241-329)||(20400009-20400097)
[»] chr5 (5 HSPs)
chr5 (180-358)||(43222054-43222232)
chr5 (276-359)||(4161251-4161334)
chr5 (275-351)||(26452493-26452569)
chr5 (180-230)||(14733610-14733660)
chr5 (180-358)||(35650246-35650424)
[»] chr2 (4 HSPs)
chr2 (241-334)||(41072979-41073072)
chr2 (426-503)||(17371362-17371439)
chr2 (275-356)||(19077139-19077220)
chr2 (241-334)||(373194-373287)
[»] chr3 (2 HSPs)
chr3 (180-230)||(43624345-43624395)
chr3 (241-359)||(32577449-32577566)
[»] chr4 (3 HSPs)
chr4 (180-221)||(37666353-37666394)
chr4 (292-332)||(47750342-47750382)
chr4 (299-359)||(40140171-40140229)
[»] chr6 (3 HSPs)
chr6 (177-209)||(1514818-1514850)
chr6 (291-359)||(28862924-28862992)
chr6 (299-351)||(27095940-27095992)
[»] chr8 (4 HSPs)
chr8 (296-359)||(3805895-3805958)
chr8 (162-203)||(6148910-6148951)
chr8 (185-230)||(21492831-21492876)
chr8 (436-503)||(10659745-10659813)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 517
Target Start/End: Complemental strand, 5446995 - 5446506
Alignment:
Q  16 acatcaatgtgggtatgcattttgttggagaaagagatagaaaaagattgatatcatatttgcaaaaaataagattgacatcatagatatgataaaatga 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  5446995 acataaatgtgggtatgcattttgttggagaaagagatagaaaaagattgatatcatatttgcaaaaaataagattgacatcatagatat------atga 5446902  T
Q  116 tgatgtgataaagagagaaagaaagagaatatgaaacctttgttggatttacgagtaaaggtcatctctatttataaaaataaatggagattgtcatgag 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  5446901 taatgtgataaagagagaaagaaagagaatatgaaacctttgttggatttacgagtaaaggtcatctctatttataaaaataaatggagattgtcgtaag 5446802  T
Q  216 aaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaa 315  Q
    ||||||||| |||||         ||||||| ||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||    
T  5446801 aaaagagatagacacaaaaaataaatggttgatctcatcattaaatgaatttcaccgttattaatcatttttaagttttattgtgtttttatctctctaa 5446702  T
Q  316 ataaaagaaatggagaagattctaaatagagaggatcctaactcattatatttacaaaacagtaaaaggtatagcaaaattgtggagagttnnnnnnnnn 415  Q
    |||||| |||||||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||||||||||||||||||||             
T  5446701 ataaaaaaaatggagaagattctaaatagagaggatcctaactc-----atttacaaaagagtaaaaggtatagcaaaattgtggagagtt-aaaaaata 5446608  T
Q  416 nnnnnggaaattttagtatatttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgacaaaaattcatgtttttatccgatctctt 515  Q
         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  5446607 aaaaaggaaattttagtatttttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgataaaaattcatgtttttatccgatcactt 5446508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 3885884 - 3885852
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcat 212  Q
    |||||||||||||||||||| ||||||||||||    
T  3885884 tctctatttataaaaataaacggagattgtcat 3885852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 9380125 - 9380177
Alignment:
Q  282 attttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga 334  Q
    ||||| ||| |||||||||||||||||| | |||||| |||||||| ||||||    
T  9380125 atttttaagctttattgtgtttttatctttttaaatagaagaaatgtagaaga 9380177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 34599389 - 34599333
Alignment:
Q  303 tttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    ||||||| ||||||||||||||||  |||| |||||||||  ||| |||||||||||    
T  34599389 tttatctctctaaataaaagaaataaagaaaattctaaatgaagacgatcctaactc 34599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 50616914 - 50616838
Alignment:
Q  275 attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat 351  Q
    |||||| ||||||||| |||| ||||| ||||| | || ||||  |||||||| | |||||||||||| ||||||||    
T  50616914 attaattattttaaagctttagtgtgtctttatttttccaaattgaagaaatgaataagattctaaatggagaggat 50616838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 50624741 - 50624665
Alignment:
Q  275 attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat 351  Q
    |||||| ||||||||| |||| ||||| ||||| | || ||||  |||||||| | |||||||||||| ||||||||    
T  50624741 attaattattttaaagctttagtgtgtctttatttttccaaattgaagaaatgaataagattctaaatggagaggat 50624665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 3405588 - 3405674
Alignment:
Q  273 ttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    |||||||| ||||| || |||||||||| |||||||| |  ||||||||||||||||||| || |||||||||||||||||||||||    
T  3405588 ttattaattattttcaaattttattgtgattttatctcttcaaataaaagaaatggagaacatcctaaatagagaggatcctaactc 3405674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 1193761 - 1193842
Alignment:
Q  275 attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaa 356  Q
    |||||| |||||||| ||||||||||| ||||||| |||||||| ||  |||| ||||||||||| ||||||| ||||||||    
T  1193761 attaattattttaaatttttattgtgtctttatctctctaaatagaaacaatgaagaagattctagatagagatgatcctaa 1193842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 2345631 - 2345692
Alignment:
Q  291 ttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatc 352  Q
    ||||||||||||||||||| |||||||| |||||   ||||||||||  |||||||||||||    
T  2345631 ttttattgtgtttttatctttctaaatagaagaatctgagaagattcgtaatagagaggatc 2345692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 46802442 - 46802479
Alignment:
Q  323 aaatggagaagattctaaatagagaggatcctaactca 360  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  46802442 aaatggagaagatcctaaatggagaggatcctaactca 46802479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 20400097 - 20400009
Alignment:
Q  241 tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatgga 329  Q
    |||| |||||||||||||||||| |  |||  | |||||| ||||| ||| ||| || ||| ||||||||| |||||| ||||||||||    
T  20400097 tggtgggtcttatcattaaatgagtcacacgatcattaattatttttaagattttttatgtctttatctgtttaaatagaagaaatgga 20400009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 43222232 - 43222054
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcatgagaaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaa 279  Q
    |||| |||||||||||||||||||||||||||| |  |||||||| |||||         ||||| ||||||||||||||||| ||  |||  | |||||    
T  43222232 tctccatttataaaaataaatggagattgtcattatgaaagagatagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaa 43222133  T
Q  280 tcatttt-aaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaact 358  Q
    | ||||| ||| |||||| |||| ||||||| ||| ||| ||| |||||||| ||| | ||||||||||| |||||||||    
T  43222132 ttattttcaaaattttat-gtgtctttatctctctgaatgaaataaatggagcagagtttaaatagagagaatcctaact 43222054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 4161251 - 4161334
Alignment:
Q  276 ttaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    ||||| ||||| || ||||||||||| ||||||| | |||||| ||||||||||||||||||  |||  | |||||||||||||    
T  4161251 ttaattatttttaaattttattgtgtctttatctctttaaatagaagaaatggagaagattcataatgaaaaggatcctaactc 4161334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 26452569 - 26452493
Alignment:
Q  275 attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat 351  Q
    |||||| ||||| ||||| |||||||||| ||||| || |||| ||| ||| ||||||||| | |||||||||||||    
T  26452569 attaattatttttaagttatattgtgtttatatctctcaaaatgaaaaaaagggagaagatacaaaatagagaggat 26452493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 14733660 - 14733610
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcatgagaaaagagattgacac 230  Q
    |||| ||||||||||||||||| |||||||||| || |||||||| |||||    
T  14733660 tctccatttataaaaataaatgaagattgtcattaggaaagagatagacac 14733610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 358
Target Start/End: Complemental strand, 35650424 - 35650246
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcatgagaaaagagattgacacnnnnnnnntatggttggtcttatcattaaatgaatttcacatttattaa 279  Q
    |||| |||||| |||||||||||||||||  || |||||| |||| |||||          |||| |||| ||| ||||||||||||||||  | |||||    
T  35650424 tctccatttattaaaataaatggagattgcaattagaaaaaagatagacacaaaaaataggtggtgggtcctattattaaatgaatttcaccatcattaa 35650325  T
Q  280 tcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaact 358  Q
    | ||||| || |||| || ||||| ||||| |  |||| |||||||||||| |||  |||||| || |||||| |||||    
T  35650324 ttatttttaaatttttttatgtttatatctcttcaaatgaaagaaatggaggagagactaaatggataggatcttaact 35650246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 41072979 - 41073072
Alignment:
Q  241 tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga 334  Q
    |||| |||| |||||||||||| || ||||| | |||||| ||||| ||| ||| |||||| ||||||| ||||||| ||||||||||||||||    
T  41072979 tggtgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatgaaagaaatggagaaga 41073072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 17371439 - 17371362
Alignment:
Q  426 ttttagtatatttgatagtttatactttggataaaaagttatcccgtggtttagtgaatgacaaaaattcatgttttt 503  Q
    |||| |||| ||||||||||| || |||||||||||||||||||| | ||||| |||  ||||| | |||||||||||    
T  17371439 ttttggtatttttgatagtttgtattttggataaaaagttatcccatagtttaatgagagacaagatttcatgttttt 17371362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 19077139 - 19077220
Alignment:
Q  275 attaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaa 356  Q
    |||||| ||||||||||||||||||||||||| || || |||| |||||||  ||||| ||  ||||| |||||||| ||||    
T  19077139 attaattattttaaagttttattgtgtttttacctctccaaatgaaagaaacagagaatatgataaatggagaggattctaa 19077220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 373194 - 373287
Alignment:
Q  241 tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaaga 334  Q
    |||| |||| ||| |||||||||||  |||  |||||||| ||||| ||| ||| |||| | ||||||| |||||||  |||||||||||||||    
T  373194 tggtgggtcatattattaaatgaatcccaccattattaattatttttaagattttttgtatctttatctttctaaatggaagaaatggagaaga 373287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 43624345 - 43624395
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcatgagaaaagagattgacac 230  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  43624345 tctctatttataaaaataaatggagattgtcattataaaagagatagacac 43624395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 32577566 - 32577449
Alignment:
Q  241 tggttggtcttatcattaaatgaatttcacatttattaatcattttaaagttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaa 340  Q
    |||| |||| ||||||||||||| || |||  | ||||||  |||| ||| ||| |||||| ||||||| || ||||| ||||||||||||||| | |||    
T  32577566 tggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagattt-ttgtgtctttatctctccaaatagaagaaatggagaagagtttaa 32577468  T
Q  341 atagagaggatcctaactc 359  Q
    || || |||||||||||||    
T  32577467 atggaaaggatcctaactc 32577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 37666394 - 37666353
Alignment:
Q  180 tctctatttataaaaataaatggagattgtcatgagaaaaga 221  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37666394 tctctatttataaaaataaatagagattgtcattagaaaaga 37666353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 47750382 - 47750342
Alignment:
Q  292 tttattgtgtttttatctgtctaaataaaagaaatggagaa 332  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  47750382 tttattgtgtttttatctctctaaatagaagaaatggagaa 47750342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 40140171 - 40140229
Alignment:
Q  299 tgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    ||||||||||| ||||||||||||||||  | ||||| ||||||||||| |||||||||||    
T  40140171 tgtttttatctctctaaataaaagaaat-taaaagatactaaatagaga-gatcctaactc 40140229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 1514850 - 1514818
Alignment:
Q  177 tcatctctatttataaaaataaatggagattgt 209  Q
    |||||||||||||||||||||||||||||||||    
T  1514850 tcatctctatttataaaaataaatggagattgt 1514818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 28862992 - 28862924
Alignment:
Q  291 ttttattgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    ||||||| ||||||||| | |||||||  |||||||||||| ||  ||||||||||| |||||||||||    
T  28862992 ttttattatgtttttatttctctaaatggaagaaatggagaggacactaaatagagaagatcctaactc 28862924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 27095992 - 27095940
Alignment:
Q  299 tgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggat 351  Q
    ||||||||||| ||||||| |||||||||||||| | | ||||| ||||||||    
T  27095992 tgtttttatctctctaaatgaaagaaatggagaatagtttaaatcgagaggat 27095940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 3805958 - 3805895
Alignment:
Q  296 ttgtgtttttatctgtctaaataaaagaaatggagaagattctaaatagagaggatcctaactc 359  Q
    |||||| |||||||||| |||||||| |||| |||| |||  ||||||||||||||| ||||||    
T  3805958 ttgtgtctttatctgtccaaataaaaaaaatagagatgatcataaatagagaggatcttaactc 3805895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 6148910 - 6148951
Alignment:
Q  162 atttacgagtaaaggtcatctctatttataaaaataaatgga 203  Q
    ||||||| |||||| ||||||| |||||||||||||||||||    
T  6148910 atttacgggtaaagatcatctccatttataaaaataaatgga 6148951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 21492876 - 21492831
Alignment:
Q  185 atttataaaaataaatggagattgtcatgagaaaagagattgacac 230  Q
    |||||||||||||||||||||||| ||| || |||||||| |||||    
T  21492876 atttataaaaataaatggagattgccattaggaaagagatagacac 21492831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 10659813 - 10659745
Alignment:
Q  436 tttgatagtttatactttggataaaaagttatcccgtggttt-agtgaatgacaaaaattcatgttttt 503  Q
    ||||||||| ||||||||||| ||||  || ||||||| ||| |||||||||||| |||| ||||||||    
T  10659813 tttgatagtctatactttggaaaaaatcttgtcccgtgatttaagtgaatgacaagaatttatgttttt 10659745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University