View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9390_high_2 (Length: 284)
Name: NF9390_high_2
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 27203273 - 27203010
Alignment:
| Q |
1 |
ggtactctagaacagtgaccaaaagcaaaaattaatagcaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaaaagttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27203273 |
ggtactctagaacagtgaccaaaagcaaaaattaataggaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaaaagtcct |
27203174 |
T |
|
| Q |
101 |
catgttaaccaaatcgctcttaaaagcagcatcaactgagggaccatcattaccctgaactgtaaacaacacaccaaaaggtccaaaataatttcagcat |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27203173 |
catgttaaccaaatcgcccttaacagcagcatcaaccgagggaccatcattaccctgaactgtaaacaacacaccaaaagggccaaaataatttcagcat |
27203074 |
T |
|
| Q |
201 |
tcttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27203073 |
tcttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
27203010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 16421772 - 16421718
Alignment:
| Q |
61 |
aactcacactgcatgaatcatattccatgtgaaaagttctcatgttaaccaaatc |
115 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| || |||| |||||||||||| |
|
|
| T |
16421772 |
aactcacactgcatgcatcaaattccatgtgaaacgtcctcaagttaaccaaatc |
16421718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University