View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_1 (Length: 531)
Name: NF9390_low_1
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 55 - 489
Target Start/End: Original strand, 28524250 - 28524681
Alignment:
| Q |
55 |
gtgtctgacaccggtacaccttccaagttccgtcagaaatgtcggtgctacacatatatcaaatgtctagtagaaatggtggaaatacaaggttaatctt |
154 |
Q |
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| T |
28524250 |
gtgtctgacaccggtacaccttccaagttccgtcagaaatgtcggtgctacacatatatcaaatgtctagtagaaatggtggaaatacatggttaatctt |
28524349 |
T |
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| Q |
155 |
aacaaaatcacacgtactattttattattttaaggaataaaagtaactattgaaacatgggaaataaagtttatatataaattggtcaaatctggtatga |
254 |
Q |
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| T |
28524350 |
aacaaaatcacacgtactattttat---tttaaggaataaaagtaactattgaaacatgggaaataaagtttatatataaattggtcaaatctggtatga |
28524446 |
T |
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| Q |
255 |
ttaccgacacctctgattgaatttgtgtctggtggtgaggcatggacacatgtgattgcattctatcaattcattttttcaaattattactgatgtcggt |
354 |
Q |
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| T |
28524447 |
ttaccgacacctctgattggatttgtgtctggtggtgaggcatggacacatgtgattacattctatcatttcattttttcaaattattactgatgtcggt |
28524546 |
T |
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| Q |
355 |
gttagtattgtgtttggtgtcaatgcttatagataatgtgtgcacgttgtaactgtgtacccttcggtgtacctctataaccaaatcgttcttatattat |
454 |
Q |
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| T |
28524547 |
gttagtattgtgtttggtgtcaatgcttatagataatgtgtgcaagttgtaactgtgtacccttcggtgtacctctataaccaaatcgctcttatattat |
28524646 |
T |
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| Q |
455 |
aaatttataatctggctgttatttgaaagagttcc |
489 |
Q |
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| T |
28524647 |
aaatttataatctggctgttatttgaaagagttcc |
28524681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 12440469 - 12440501
Alignment:
| Q |
319 |
atcaattcattttttcaaattattactgatgtc |
351 |
Q |
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| T |
12440469 |
atcaattcattttttcaaattattagtgatgtc |
12440501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 36768856 - 36768908
Alignment:
| Q |
299 |
gacacatgtgattgcattctatcaattcattttttcaaattattactgatgtc |
351 |
Q |
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| T |
36768856 |
gacacatgtgattacattcaattaattaattctctcaaattattactgatgtc |
36768908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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