View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_11 (Length: 250)
Name: NF9390_low_11
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 9065970 - 9065726
Alignment:
| Q |
5 |
gagaagcagagacaatttagccttaggcaatgatggataaaaagaagaagaaacactactacatctagctttgtgtggtttaatgatgggattatgcaaa |
104 |
Q |
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| T |
9065970 |
gagaagaagagacaatttagccttaggcaatgatggataaaaagaagaagaaacactactacctctagctttgtgtggtctaatgatgggattatgcaaa |
9065871 |
T |
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| Q |
105 |
gaattcagggttaccctccaactacatactctattcggtcttaaatgtacgtagaagttgagtcaacacatggatgtatttagtttaaattttagacgaa |
204 |
Q |
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| T |
9065870 |
gaattcagggttatcctccaactacatagtctattcggtcttaaatgtacgcagaagttgagtcaacacatggatgtatttaatttaaattttagacgaa |
9065771 |
T |
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| Q |
205 |
atacatcaatttttgttgacttaaacttttgtttatatttgagacc |
250 |
Q |
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| T |
9065770 |
atacatcaatttttgttgactt-aacttttgtttatatttgagacc |
9065726 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 24098700 - 24098631
Alignment:
| Q |
179 |
tgtatttagtttaaattttagacgaaatacatcaatttttgttgacttaaacttttgtttatatttgagac |
249 |
Q |
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| T |
24098700 |
tgtatttagttcaaattttagactaaatatatcaatttttgttga-tttaacttttgtttatatttaagac |
24098631 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 34711172 - 34711134
Alignment:
| Q |
177 |
gatgtatttagtttaaattttagacgaaatacatcaatt |
215 |
Q |
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| T |
34711172 |
gatgtatttagtttatattttagacaaaatacatcaatt |
34711134 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 24681532 - 24681494
Alignment:
| Q |
178 |
atgtatttagtttaaattttagacgaaatacatcaattt |
216 |
Q |
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| T |
24681532 |
atgtatttaattcaaattttagacgaaatacatcaattt |
24681494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 41921213 - 41921258
Alignment:
| Q |
189 |
ttaaattttagacgaaatacatcaatttttgttgacttaaactttt |
234 |
Q |
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| T |
41921213 |
ttaaattttagactaaattcatcaattcttgttgatttaaactttt |
41921258 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 25809323 - 25809394
Alignment:
| Q |
177 |
gatgtatttagtttaaattttagacgaaatacatcaatttttgttgacttaaacttttgtttatatttgagac |
249 |
Q |
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| T |
25809323 |
gatgtatttaattcaacttttggaccaaatacattaacttttgttgacccaa-cttttgtttatatttgagac |
25809394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 47920362 - 47920322
Alignment:
| Q |
177 |
gatgtatttagtttaaattttagacgaaatacatcaatttt |
217 |
Q |
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| T |
47920362 |
gatgtatttagattaaattttaaactaaatacatcaatttt |
47920322 |
T |
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