View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_13 (Length: 249)
Name: NF9390_low_13
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 31108938 - 31109176
Alignment:
| Q |
8 |
attatactcttgatactatcatttgctctttgttttcatatgaatatattacaatgtcattaaattggatgttcaaaatcatagattggtcaatgtaatt |
107 |
Q |
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| T |
31108938 |
attatactcttgatactatcatttgctctttgttttcatatgaatatattacaatgttattaaattggatgttcaaaatcatagattggtcaatgtcatt |
31109037 |
T |
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| Q |
108 |
tgcgcaattgaaaataaggagatcaaaactgtggttttgttcnnnnnnnnnnnggacgagagctgtattaaagcctctaatgtatataaaaaagagtgtt |
207 |
Q |
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| T |
31109038 |
tgcgcaattgaaaataaggagatcaaaactgcggttttg-tccaaaaaaaaaaggacgagagctgtattaaagcctctaatgtatataaaaaagagtgtt |
31109136 |
T |
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| Q |
208 |
gacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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| T |
31109137 |
gacacatgtgcacccctatgtggcaatacacctcttacac |
31109176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 18491907 - 18491851
Alignment:
| Q |
191 |
atataaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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| T |
18491907 |
atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
18491851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 34895645 - 34895695
Alignment:
| Q |
197 |
aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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| T |
34895645 |
aaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
34895695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 41281876 - 41281928
Alignment:
| Q |
195 |
aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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||||||||||| ||| |||||| ||||| || |||||||||||||||||||| |
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| T |
41281876 |
aaaaaagagtggtgatacatgtacacccccatatggcaatacacctcttacac |
41281928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 4190170 - 4190219
Alignment:
| Q |
198 |
aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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| T |
4190170 |
aaagagtggtgatacatgtatacccttatgtggcaatacacctcttacac |
4190219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 10457798 - 10457845
Alignment:
| Q |
199 |
aagagtgttgacacatgtgtacccctatgtggcaatacacctcttaca |
246 |
Q |
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| T |
10457798 |
aagagtgttgatacatgtataccctcatgtggcaatacacctcttaca |
10457845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 31513483 - 31513434
Alignment:
| Q |
197 |
aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttaca |
246 |
Q |
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||||||||| ||| |||||| |||| ||||||||||||||||||||||| |
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| T |
31513483 |
aaaagagtggtgatacatgtacacccttatgtggcaatacacctcttaca |
31513434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 32728552 - 32728503
Alignment:
| Q |
198 |
aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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| T |
32728552 |
aaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
32728503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 35003492 - 35003440
Alignment:
| Q |
195 |
aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
247 |
Q |
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||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
35003492 |
aaaaaagagtggtgatacatgcacacccccatgtggcaatacacctcttacac |
35003440 |
T |
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