View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_16 (Length: 237)
Name: NF9390_low_16
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31109650 - 31109872
Alignment:
| Q |
1 |
tccaaaatgtaattttgtcaacttaaaagaacttatcatcaactgtaacaacagagtatgtcatcgatttttcatatgactgaatggtccatgactaccc |
100 |
Q |
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| T |
31109650 |
tccaaaatgtaattttgtcaacttaaaagaacttatcatcaactgtaacaacagagtatgtcatcgatttttcatatgactgaatggtccatgactaccc |
31109749 |
T |
|
| Q |
101 |
agtaaattgaactcaactttnnnnnnnnnnnnnnnnnnnnnnngtagtacaaattacaatttacagcttgtatcaacttgtgcttgcatatcggcatatc |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31109750 |
agtaaattgaactcaacttttatatctatatctatatctatatgtagtacaaattacaattcacagcttgtatcaacttgtgcttgcatatcggcatatc |
31109849 |
T |
|
| Q |
201 |
agcatggtacttaacaagcgatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31109850 |
agcatggtacttaacaagcgatg |
31109872 |
T |
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