View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_17 (Length: 231)
Name: NF9390_low_17
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 36202358 - 36202152
Alignment:
| Q |
8 |
gaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtac |
107 |
Q |
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| T |
36202358 |
gaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtac |
36202259 |
T |
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| Q |
108 |
ggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataat |
207 |
Q |
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| T |
36202258 |
ggtatagatgaattaagactttgttttttctattagttgcctgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataat |
36202159 |
T |
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| Q |
208 |
gtgatgt |
214 |
Q |
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||||||| |
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| T |
36202158 |
gtgatgt |
36202152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 36198939 - 36198800
Alignment:
| Q |
57 |
ctttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttg |
156 |
Q |
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| T |
36198939 |
ctttggaaaacacaatgttggagagattagagattggtaagtgcttttta-ggtatagatgaatttacactttgcttttttggtcagttgcttgtgcttg |
36198841 |
T |
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| Q |
157 |
taattctaagatatgactgattcagataataataataataa |
197 |
Q |
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| T |
36198840 |
taattttaagatatgaccagttcagagaataataataataa |
36198800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 36214793 - 36214661
Alignment:
| Q |
58 |
tttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgt |
157 |
Q |
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| T |
36214793 |
tttggaaaacacaatgttggggagattagagattgacaagtgctttgt-tggtatagatcaattaagactttgcttattcggtcagttgcatgtgcttgt |
36214695 |
T |
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| Q |
158 |
aattctaagatatgactgattcagataataataa |
191 |
Q |
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|||| ||||||||||| || |||||||||||| |
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| T |
36214694 |
aattttaagatatgaccagtttagataataataa |
36214661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 36209923 - 36209877
Alignment:
| Q |
10 |
agcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
56 |
Q |
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| T |
36209923 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
36209877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 36184646 - 36184608
Alignment:
| Q |
7 |
agaagcagagatgatgaaaatctgaagtcgaaacatgaa |
45 |
Q |
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| T |
36184646 |
agaagcagagttgatgaaaatctgaagtccaaacatgaa |
36184608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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