View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_3 (Length: 402)
Name: NF9390_low_3
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 47045098 - 47045482
Alignment:
| Q |
1 |
atcatgaatctggcaatagctttgttgtttcaattaaagttgcccaaatatttttggttttatgcaaccacccatgatgattagcatgaaaaattatcct |
100 |
Q |
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| T |
47045098 |
atcatgaatctggcaatagctttgttgtttcaattaaagttgcccaaatatttttggttttatgcaaccacccatgttgattagcatgaaaaattatcct |
47045197 |
T |
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| Q |
101 |
cattgttttgttaaggaagggtataagtagtcaatttcagattactccttgtttaccccttgtgaatggtactgattttactgttgtgtttgtagataat |
200 |
Q |
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| T |
47045198 |
cattgttt-gttaaggaagggtataagtagtcaatttcagattactccttgtttaccccttgtgaatggtactgattttactgttgtgtttgtagataat |
47045296 |
T |
|
| Q |
201 |
atgatccttgtaagaacttaattgacataattttcaagaatcttgaggacaatttcaaaatcaaagacttgaggacaattcatatttccttggtttaaaa |
300 |
Q |
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| T |
47045297 |
atgatccttgtaagaacttaattgacataattttcaagaatcttgaggacaatttcaaaatcaaagacttgaggacaattcatatttccttggtttaaaa |
47045396 |
T |
|
| Q |
301 |
gtaacccgtttaaagtctgggattttaattccataaagcaagtactgcttagnnnnnnnngaagcatacattactcctatccaaat |
386 |
Q |
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| T |
47045397 |
gtaacccgtttaaagtctgggattttaattccataaagcaagtactgcttagttttttttgaagcattcatgactcctatccaaat |
47045482 |
T |
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