View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9390_low_8 (Length: 330)
Name: NF9390_low_8
Description: NF9390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9390_low_8 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 177637 - 177385
Alignment:
| Q |
1 |
ctttcttcggcaacctccgttggatgatagcactacaattagcatcaagttggatggtttcttcatcatgaattttcctcttcttggaaagcatgtcttt |
100 |
Q |
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| T |
177637 |
ctttcttcggcaacctccgttggatgatagcactacaattagcatcaagttggatggtttcttcatcatgaattctcctcttcttggaaagcatgtcttt |
177538 |
T |
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| Q |
101 |
catgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaatttgcaatttcttgaagagctcaagaaaccttgcatattgcttt |
200 |
Q |
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| T |
177537 |
catgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaatttgcaatttcttgaagagctcaagaaaccttgcgtattgcttt |
177438 |
T |
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| Q |
201 |
tctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
253 |
Q |
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| T |
177437 |
tctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
177385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20171258 - 20171006
Alignment:
| Q |
1 |
ctttcttcggcaacctccgttggatgatagcactacaattagcatcaagttggatggtttcttcatcatgaattttcctcttcttggaaagcatgtcttt |
100 |
Q |
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| T |
20171258 |
ctttcttgggcaaccttcgttgaatgatggcactacaatttgcatcgagttggatgatttcttcatcattaattatcctcttcttgtaaagaatgtcttt |
20171159 |
T |
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| Q |
101 |
catgaacttagcatacgccggcatttgctccaaggcttccgagaatggaatgtcaatttgcaatttcttgaagagctcaagaaaccttgcatattgcttt |
200 |
Q |
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| T |
20171158 |
catgaatttggcataagacgacatttgctccaaggcttccgaaaatggaatgtcaatttgtaacttcttgaagagttcaagaaaccttgcgtattgcctt |
20171059 |
T |
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| Q |
201 |
tctttatccttctttgatggagcatgtgggtaaggtaagtgttgattcaacac |
253 |
Q |
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| T |
20171058 |
tctttttctttctttgatggagcatgtggatagggaaagtgttgagtcaacac |
20171006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 26131070 - 26130896
Alignment:
| Q |
21 |
tggatgatagcactacaattagcatcaagttggatggtttcttcatcatgaattttcctcttcttggaaagcatgtctttcatgaacttagcatacgccg |
120 |
Q |
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| T |
26131070 |
tggatgattgcactacaatttgcattaagttgaattgttactttatcattgtacttcctcttcttataaaggatttccttccagaactaagcatacgtca |
26130971 |
T |
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| Q |
121 |
gcatttgctccaaggcttccgagaatggaatgtcaatttgcaatttcttgaagagctcaagaaaccttgcatatt |
195 |
Q |
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| T |
26130970 |
gaattttctccaaggcttccgagaatggaatattgattttcaatctcttgaaaatatcaaggaaccttgcatatt |
26130896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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