View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9391_high_9 (Length: 319)

Name: NF9391_high_9
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9391_high_9
NF9391_high_9
[»] chr4 (9 HSPs)
chr4 (1-304)||(42769484-42769787)
chr4 (1-121)||(42743797-42743917)
chr4 (1-121)||(42753156-42753276)
chr4 (1-121)||(42717169-42717289)
chr4 (5-121)||(42762778-42762894)
chr4 (1-121)||(42734596-42734716)
chr4 (161-282)||(42717023-42717147)
chr4 (149-282)||(42734726-42734862)
chr4 (142-223)||(42762694-42762775)
[»] chr5 (1 HSPs)
chr5 (1-114)||(23040557-23040670)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 42769787 - 42769484
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769787 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 42769688  T
Q  101 gcggcctataaggtatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42769687 gcggcctataaggtatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgttg 42769588  T
Q  201 atgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgttgtagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769587 atgtgatttcggcgtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgttgtagt 42769488  T
Q  301 tagt 304  Q
    ||||    
T  42769487 tagt 42769484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42743917 - 42743797
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||||||    
T  42743917 acatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagtt 42743818  T
Q  101 gcggcctataaggtatgttgg 121  Q
    || ||||||||||| ||||||    
T  42743817 gcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42753276 - 42753156
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||||||    
T  42753276 acatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagtt 42753177  T
Q  101 gcggcctataaggtatgttgg 121  Q
    || ||||||||||| ||||||    
T  42753176 gcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42717289 - 42717169
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||||||||||||||||| || || |||||||||    
T  42717289 acatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaacagcaagtggtggatcgccaaaagcacgagtt 42717190  T
Q  101 gcggcctataaggtatgttgg 121  Q
    |  ||||||||||| ||||||    
T  42717189 gtagcctataaggtttgttgg 42717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 42762894 - 42762778
Alignment:
Q  5 actttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcgg 104  Q
    ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || ||||||||||| |    
T  42762894 actttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcag 42762795  T
Q  105 cctataaggtatgttgg 121  Q
    |||||||||| ||||||    
T  42762794 cctataaggtttgttgg 42762778  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42734596 - 42734716
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| || || |||||||||    
T  42734596 acatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgccaaaagcacgagtt 42734695  T
Q  101 gcggcctataaggtatgttgg 121  Q
     | ||||||||||| ||||||    
T  42734696 tccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
Q  161 attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg 257  Q
    |||||||||||||| ||||||||||||  ||| ||||| || ||| |||| | |||| |||||||||||   || || |||||||| || |||||||||     
T  42717147 attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt 42717048  T
Q  258 ctatagggtctttccatgcagttgc 282  Q
    | |||||||||||||||||||||||    
T  42717047 ccatagggtctttccatgcagttgc 42717023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
Q  149 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg 245  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| |||| | |||| || |||||||   ||| || |||||| | |    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg 42734825  T
Q  246 aaagcagtattgctatagggtctttccatgcagttgc 282  Q
    | ||||||||| | |||||||||||||||||||||||    
T  42734826 atagcagtatttccatagggtctttccatgcagttgc 42734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
Q  142 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt 223  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| |||| |||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt 42762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23040557 - 23040670
Alignment:
Q  1 acatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagtt 100  Q
    ||||||||||||||| |  ||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| || || ||||||    
T  23040557 acatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttggcaatggccgaggaacagcaagtggtggatcaccaaaagctcgagtt 23040656  T
Q  101 gcggcctataaggt 114  Q
    || |||||||||||    
T  23040657 gcagcctataaggt 23040670  T

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