View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9391_low_1 (Length: 712)

Name: NF9391_low_1
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9391_low_1
NF9391_low_1
[»] chr6 (5 HSPs)
chr6 (1-453)||(4308985-4309437)
chr6 (536-712)||(4308726-4308902)
chr6 (612-695)||(4308847-4308930)
chr6 (613-656)||(13908349-13908392)
chr6 (614-651)||(33027706-33027743)
[»] chr4 (1 HSPs)
chr4 (618-652)||(50298628-50298662)
[»] chr3 (4 HSPs)
chr3 (608-653)||(8007579-8007624)
chr3 (614-657)||(48286729-48286772)
chr3 (614-652)||(30657399-30657437)
chr3 (562-591)||(34234970-34234999)
[»] chr5 (1 HSPs)
chr5 (613-657)||(28578953-28578997)
[»] chr8 (1 HSPs)
chr8 (165-223)||(24344229-24344287)
[»] chr7 (3 HSPs)
chr7 (614-652)||(19302482-19302520)
chr7 (614-652)||(30748953-30748991)
chr7 (614-651)||(34036031-34036068)
[»] chr2 (1 HSPs)
chr2 (614-656)||(18525160-18525202)


Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 4309437 - 4308985
Alignment:
Q  1 ttcagcgccagtggaactggcgctggagcatcgcgatcgccgttactgcctctgattatatcagagtgcggcggtggcggtggaatgggggtatttgggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4309437 ttcagcgccagtggaactggcgctggagcatcgcgatcgccgttactgcctctgattatatcagagtgcggtggtggcggtggaatgggggtatttgggg 4309338  T
Q  101 gtgaaacaagaattgctggagtgaagagtccaccggggtttttggatgagttttttagggatagtgattttgaaactttggataaaattttgaaagggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4309337 gtgaaacaagaattgctggagtgaagagtccaccggggtttttggatgagttttttagggatagtgattttgaaactttggataaaattttgaaagggtt 4309238  T
Q  201 gtatgaggaattgagagggagtgtgatgaaggtatctgtgcttgggaattttcaggattcgcttagggttttgttgtttttggttaggttacctattggt 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4309237 gtacgaggaattgagagggagtgtgatgaaggtatctgtgcttgggaattttcaggattcgcttagggttttgttgtttttggttaggttacctattggt 4309138  T
Q  301 gcaaagagtcttgttagtcatgaatggtggattcctaaaggtgtttatatgaatggtcgtgctatcgaaatgactagcattttgggtccnnnnnnncatg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  4309137 gcaaagagtcttgttagtcatgaatggtggattcctaaaggtgtttatatgaatggtcgtgctatcgaaatgactagcattttgggtcctttttttcatg 4309038  T
Q  401 ttagtgctcttcctgatcaaaacttcttcaagagttcgccggatattgggtga 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4309037 ttagtgctcttcctgatcaaaacttcttcaagagttcgccggatattgggtga 4308985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 536 - 712
Target Start/End: Complemental strand, 4308902 - 4308726
Alignment:
Q  536 tctactgacataagcactagttgttctgtttaaattgacttatttgagcttatctagtggcggaggcaccactgacattgtttgaattgatttattttag 635  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4308902 tctactgacataagcactagtggttctgtttaaattgacttatttgaacttatctagtggcggaggcaccactgacattgtttgaattgatttattttag 4308803  T
Q  636 cttatctactgacataaacaccggtgatgctgtttaaattgactgatttgagcttatctactggtataatcactagt 712  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4308802 cttatctactgacataaacaccggtgacgctgtttaaattgactgatttgagcttatctactggtataatcactagt 4308726  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 612 - 695
Target Start/End: Complemental strand, 4308930 - 4308847
Alignment:
Q  612 attgtttgaattgatttattttagcttatctactgacataaacaccggtgatgctgtttaaattgactgatttgagcttatcta 695  Q
    |||||||| ||||  |||||| || |||||||||||||||| |||  ||| | ||||||||||||||| |||||| ||||||||    
T  4308930 attgtttggattggcttatttgagtttatctactgacataagcactagtggttctgtttaaattgacttatttgaacttatcta 4308847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 656
Target Start/End: Complemental strand, 13908392 - 13908349
Alignment:
Q  613 ttgtttgaattgatttattttagcttatctactgacataaacac 656  Q
    ||||||||||||| |||||| | |||||||||||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataaacac 13908349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 651
Target Start/End: Complemental strand, 33027743 - 33027706
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacata 651  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  33027743 tgtttggattgatttatttgagcttatctactgacata 33027706  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 652
Target Start/End: Complemental strand, 50298662 - 50298628
Alignment:
Q  618 tgaattgatttattttagcttatctactgacataa 652  Q
    |||||||||||||||||||||||||||||||||||    
T  50298662 tgaattgatttattttagcttatctactgacataa 50298628  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 653
Target Start/End: Original strand, 8007579 - 8007624
Alignment:
Q  608 tgacattgtttgaattgatttattttagcttatctactgacataaa 653  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||    
T  8007579 tgacattgtttggattgacttattttagcttatctacttacataaa 8007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Original strand, 48286729 - 48286772
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacataaacacc 657  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||    
T  48286729 tgtttgaattgatttatttgagcttatctacggacaaaaacacc 48286772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 652
Target Start/End: Complemental strand, 30657437 - 30657399
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacataa 652  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  30657437 tgtttgaattgatttatttgagtttatctactgacataa 30657399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 591
Target Start/End: Complemental strand, 34234999 - 34234970
Alignment:
Q  562 tgtttaaattgacttatttgagcttatcta 591  Q
    ||||||||||||||||||||||||||||||    
T  34234999 tgtttaaattgacttatttgagcttatcta 34234970  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 28578997 - 28578953
Alignment:
Q  613 ttgtttgaattgatttattttagcttatctactgacataaacacc 657  Q
    ||||||||||||| |||||| |||||||||||||||| |||||||    
T  28578997 ttgtttgaattgacttatttgagcttatctactgacaaaaacacc 28578953  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 24344287 - 24344229
Alignment:
Q  165 tgattttgaaactttggataaaattttgaaagggttgtatgaggaattgagagggagtg 223  Q
    ||||||||||| ||||| || |||||| |||| | |||||||||| |||||||||||||    
T  24344287 tgattttgaaagtttggttagaatttttaaagaggtgtatgaggagttgagagggagtg 24344229  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 652
Target Start/End: Original strand, 19302482 - 19302520
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacataa 652  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataa 19302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 652
Target Start/End: Original strand, 30748953 - 30748991
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacataa 652  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataa 30748991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 651
Target Start/End: Complemental strand, 34036068 - 34036031
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacata 651  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 656
Target Start/End: Original strand, 18525160 - 18525202
Alignment:
Q  614 tgtttgaattgatttattttagcttatctactgacataaacac 656  Q
    |||||||||||| |||||| ||||||||||| |||||||||||    
T  18525160 tgtttgaattgacttatttgagcttatctacagacataaacac 18525202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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