View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9391_low_10 (Length: 458)
Name: NF9391_low_10
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 22956053 - 22955629
Alignment:
| Q |
17 |
catcaaggatgcaaatagaattacctcaccaaatgcaccgcctcgcaccacatcgaacaataaatcgagcacacaagatactccgccacacaactcatat |
116 |
Q |
| |
|
|||||| |||| |||||||| | || ||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22956053 |
catcaatgatgtgaatagaatcatctgaccaaattcaccgcctcgcgccgtatctaacaataaatcgagcacacaagatactccgccacacaactcatat |
22955954 |
T |
|
| Q |
117 |
tgtgacccaagttggctgtgacataacttccagtggggaagtaccgagctttatacaacgagaaactagagagtttggatcagtttgaaactttcagcct |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22955953 |
tgtgacccaagttggatgtgacataacttccagtggggaagtaccgagctttatataacgagaaactagagagtttggatcagtttgaaactttcagcct |
22955854 |
T |
|
| Q |
217 |
tgttataagaataagttgttattctatctctactgatcatggacgaaagtctcaaatacttacatgtatcgatcacatattgaacccctaaaacatttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22955853 |
tgttataagaataagttgttattctatctctactgatcatggacgaaagtctcaaatacttacatgtaccgatcacatattgaacccctaaaacatttgt |
22955754 |
T |
|
| Q |
317 |
gatggaagtctttaaagtcgcaggaacattcctattgcaatatatatttgacttggggagaataatatcttgactagaggctgcctcatacacagtaagg |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22955753 |
gatggaagtctttaaagtcacaggaacattcctactgcaatacatatatgatttggggagaataatatcttgactagaggctgccttatacacagtaagg |
22955654 |
T |
|
| Q |
417 |
atgtttttcataatttgagtctaac |
441 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
22955653 |
atgtttttcataatttgggtctaac |
22955629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 223 - 433
Target Start/End: Complemental strand, 9282093 - 9281883
Alignment:
| Q |
223 |
aagaataagttgttattctatctctactgatcatggacgaaagtctcaaatacttacatgtatcgatcacatattgaacccctaaaacatttgtgatgga |
322 |
Q |
| |
|
||||| |||||||| |||||||||| | ||||||||||| ||||| |||||||||||||||| | | || | |||||||||| |||| || ||||||||| |
|
|
| T |
9282093 |
aagaaaaagttgttgttctatctctgccgatcatggacggaagtcccaaatacttacatgtacccaacataaattgaacccccaaaatatatgtgatgga |
9281994 |
T |
|
| Q |
323 |
agtctttaaagtcgcaggaacattcctattgcaatatatatttgacttggggagaataatatcttgactagaggctgcctcatacacagtaaggatgttt |
422 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||| | ||| ||| | ||| ||||| ||| || |||| || |||| |||| | ||||||||||| |
|
|
| T |
9281993 |
agtctttaaaatgtcaggaacattcctgctgcaatatatctatgatttgcgaagactaatagctttaccagagtcttcctcgtacagaataaggatgttt |
9281894 |
T |
|
| Q |
423 |
ttcataatttg |
433 |
Q |
| |
|
||||||||||| |
|
|
| T |
9281893 |
ttcataatttg |
9281883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University