View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_14 (Length: 413)
Name: NF9391_low_14
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 15527053 - 15526863
Alignment:
| Q |
18 |
ttattctgcaccactctaatgtaaagactct--aaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctctatatataagaaaaa |
115 |
Q |
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| T |
15527053 |
ttattctgcaccattctaatgtaaagactctctaaataccatggtgcaatttcgtctcatatgaaatatatttattttactgctctatatataagaaaaa |
15526954 |
T |
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| Q |
116 |
gctggatcaacaaaaaattatgcattttatataaattttgaaccacatatttgtttacgaaactttttctatggatggaattatattttta |
206 |
Q |
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| T |
15526953 |
gctggatcaacaaaaatttgtgcattttatataaattttgaaccatatatttgtttactaaactttttctatagatgaaattatagtttta |
15526863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 15526799 - 15526746
Alignment:
| Q |
213 |
ttcaacttacttcataacgcggttaaattttttcatcattcaatcaaaaattat |
266 |
Q |
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| T |
15526799 |
ttcaacttacttcataacacgattaaactttttcatcattcaatcaaaaattat |
15526746 |
T |
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