View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_16 (Length: 393)
Name: NF9391_low_16
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 43859904 - 43860279
Alignment:
| Q |
1 |
cttggttgttagaagagcagcgtctgatgtgaagagacccttgttttgtagaaggacaggataatagtcattgtcaaatgttgttgagctattaggatcc |
100 |
Q |
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| T |
43859904 |
cttggttgttagaagagcagcgtctgatgtgaagagacccttgttttgtagaaggacaggataatagtcattgtcaaatgttgttgagctattaggatcc |
43860003 |
T |
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| Q |
101 |
atttcgactgttgtagtggtgtcacttaggccttggcatttggtcttcaagaaatttgcataagttggattcagagatggatcttgatcaccttttccag |
200 |
Q |
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| T |
43860004 |
atttcgactgttgtagtggtgtcacttaggccttggcatttggtcttcaagaaatttgcgtaagttggatttagagatggatcttgatcaccttttccag |
43860103 |
T |
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| Q |
201 |
tgaagttgaaaagcctgttgctgaataagttgcaatgtcctactccaattgtgtgtgctcctatacatacgtatagccaataagttaatttaactagttt |
300 |
Q |
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| T |
43860104 |
tgaagttgaaaagcctgttgctgaataagttgcaatgtcctactccaattgtgtgtgctcctatacatacgtatagccaataagttaatttaactagttt |
43860203 |
T |
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| Q |
301 |
gtttgaataatttagcaccgacactttagaatatgtgtttgtgtccaaagtgactccgacgcatgtggtcatatac |
376 |
Q |
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| T |
43860204 |
gtttgaataatttagcatcgacactttagaatatgcgtttgtgtccaaagtgactccgacgcatgtggtcatatac |
43860279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 43858233 - 43858328
Alignment:
| Q |
1 |
cttggttgttagaagagcagcgtctgatgtgaagagacccttgttttgtagaaggacaggataatagtcattgtcaaatgttgttgagctattagg |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43858233 |
cttggttgttagaagagcagcgtctgatgtgaagagacccttgttttgtagaaggacaggataatagtcattgtcaaatgttgttgagctattagg |
43858328 |
T |
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