View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9391_low_20 (Length: 320)

Name: NF9391_low_20
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9391_low_20
NF9391_low_20
[»] chr3 (5 HSPs)
chr3 (1-311)||(36280769-36281081)
chr3 (54-281)||(6820676-6820907)
chr3 (59-306)||(7129924-7130174)
chr3 (66-101)||(48352158-48352193)
chr3 (65-114)||(26955807-26955856)
[»] chr8 (2 HSPs)
chr8 (5-181)||(33178050-33178224)
chr8 (64-121)||(15038747-15038804)
[»] chr4 (2 HSPs)
chr4 (205-310)||(1072501-1072606)
chr4 (59-128)||(1072686-1072755)
[»] chr1 (3 HSPs)
chr1 (1-116)||(16305298-16305411)
chr1 (66-101)||(48710362-48710397)
chr1 (65-101)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (66-101)||(27515880-27515915)
chr5 (65-101)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (56-121)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 36280769 - 36281081
Alignment:
Q  1 tcaactgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttcca 100  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36280769 tcaactgatccaacctgtaaaaccattggagttagccgcccaacacactctctctcaccaactcttcctcccaagcaaataacctcctacgccacttcca 36280868  T
Q  101 cttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataa--gtatctcaggg 198  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36280869 ctcctcaccgttcactccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagtgtatctcaggg 36280968  T
Q  199 acatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacc 298  Q
     ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36280969 gcatatcatccaatcagggatctaacaaaaacaaagtaaaattcccatcacacatcttccaactaattttatctctcagccactcaccatccacctgacc 36281068  T
Q  299 cacgccctctctg 311  Q
    |||||||||||||    
T  36281069 cacgccctctctg 36281081  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 6820907 - 6820676
Alignment:
Q  54 ctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtca 153  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||||||| |||||||||||| ||||| |   || |||||| |||||||||| ||| ||    
T  6820907 ctcaccaactcttccttccaagcaaataacctcatacgctacttccactcctcaccgttcactccccatcatgtagtgaacatattctctacagttgcca 6820808  T
Q  154 attta-tatcagctaactcgtataatcttctataagtat--ctcagggacatatcatcc-aatcaggaatctaacaaaaacaaagtagaattcccatcac 249  Q
    ||||| | ||||||||||| ||||||||||||||| |||  |||| || || | ||||| || || | ||||||| |||||| |||||| ||||||||||    
T  6820807 atttattgtcagctaactcatataatcttctataactatccctcaagggcaaaccatccaaaccaaggatctaaccaaaacagagtagagttcccatcac 6820708  T
Q  250 acatcttccaactaatattatctctcagccac 281  Q
     ||  ||| ||||||| |||||||||| ||||    
T  6820707 ccacgttctaactaatgttatctctcaaccac 6820676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 59 - 306
Target Start/End: Original strand, 7129924 - 7130174
Alignment:
Q  59 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaa-ttt 157  Q
    ||||| ||||||||||| ||| |||||||||| |||||| |||  |||||| ||| | |||||||| ||||| |||| || ||||||| ||| ||| |||    
T  7129924 caactcttcctcccaagaaaacaacctcctacaccacttacacgcctcaccattctctccccaccctataataaacatatgctctacaattgccaatttt 7130023  T
Q  158 atatcagctaactcgtataatcttctataagtatc--tcagggacatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatct 255  Q
     |||| |||||||| |||||||||| | || | ||  |||||  |||| || |||| |||| ||||||| |||||| ||||||| || |||||| ||  |    
T  7130024 ttatccgctaactcatataatcttccaaaactctccttcaggagcataccacccaaccagggatctaaccaaaacatagtagaagtcgcatcacccacgt 7130123  T
Q  256 tccaactaatattatctctcagccactcaccatccacctgacccacgccct 306  Q
    ||  |||||| |||||||||| |||| || |||||||||||||||||||||    
T  7130124 tctgactaatgttatctctcaaccacccaacatccacctgacccacgccct 7130174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 48352193 - 48352158
Alignment:
Q  66 tcctcccaagcaaataacctcctacgccacttccac 101  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48352193 tcctcccaagcaaataacctcctccgccacttccac 48352158  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 26955807 - 26955856
Alignment:
Q  65 ttcctcccaagcaaataacctcctacgccacttccacttctcaccgttca 114  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||| ||||    
T  26955807 ttcctcccaagcaaacaacctcttacgccactttcacgtctcaccattca 26955856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 33178050 - 33178224
Alignment:
Q  5 ctgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttc 104  Q
    ||||||||||||||||||| | |||| |||  ||||| |||||  ||| |||||||||| |||||||||||| || ||||||  |||||||||||||  |    
T  33178050 ctgatccaacctgtaaaacaactggagttagacgccctacaca--ctccctcaccaactcttcctcccaagcgaacaacctctgacgccacttccacgcc 33178147  T
Q  105 tcaccgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatctt 181  Q
    || || |||| |||||||||||||   |||| || | | ||| ||||||| ||||  ||| ||||||||| ||||||    
T  33178148 tctccattcagcccccaccccatagaaaacatatccaccacagttgtcaacttattgcagttaactcgtaaaatctt 33178224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 15038747 - 15038804
Alignment:
Q  64 tttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 121  Q
    |||||||||||||||| ||| |||||| ||||||||||  |||||||||||| |||||    
T  15038747 tttcctcccaagcaaacaacgtcctacaccacttccacggctcaccgttcactcccca 15038804  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 1072606 - 1072501
Alignment:
Q  205 catccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacccacgcc 304  Q
    ||||||| |||  ||||||| ||||||||||| ||||| ||| || || ||||| |||||||||||||||||| ||| | |||||||| || || || ||    
T  1072606 catccaaccagagatctaaccaaaacaaagtaaaattctcattacccaccttccgactaatattatctctcagtcaccctccatccacgtgtcctactcc 1072507  T
Q  305 ctctct 310  Q
    ||||||    
T  1072506 ctctct 1072501  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 1072755 - 1072686
Alignment:
Q  59 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccata 128  Q
    ||||| |||||||||| | | |||||||||||| ||||| |||  |||||| ||||| ||||||||||||    
T  1072755 caactcttcctcccaaacgagtaacctcctacgacacttgcacgcctcaccattcacaccccaccccata 1072686  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 16305298 - 16305411
Alignment:
Q  1 tcaactgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttcca 100  Q
    ||||||| ||||||||| ||||||| |  | ||| | ||| ||||||  ||| |||| ||||| |||||||||||| ||||||||||||| | |||||||    
T  16305298 tcaactgttccaacctgcaaaaccactcaagttagctgcctaacaca--ctccctcagcaactcttcctcccaagcgaataacctcctacacaacttcca 16305395  T
Q  101 cttctcaccgttcacc 116  Q
    |  |||||| ||||||    
T  16305396 cacctcaccattcacc 16305411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 48710362 - 48710397
Alignment:
Q  66 tcctcccaagcaaataacctcctacgccacttccac 101  Q
    |||||||| |||||||||||||||||||||||||||    
T  48710362 tcctcccacgcaaataacctcctacgccacttccac 48710397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 13216975 - 13217011
Alignment:
Q  65 ttcctcccaagcaaataacctcctacgccacttccac 101  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  13216975 ttcctcccaagctaataacctcctactccacttccac 13217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 27515880 - 27515915
Alignment:
Q  66 tcctcccaagcaaataacctcctacgccacttccac 101  Q
    |||||||| |||||||||||||||||||||||||||    
T  27515880 tcctcccacgcaaataacctcctacgccacttccac 27515915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 42918063 - 42918027
Alignment:
Q  65 ttcctcccaagcaaataacctcctacgccacttccac 101  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  42918063 ttcctcccaagcaaataacctcctccgccatttccac 42918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 2845423 - 2845488
Alignment:
Q  56 caccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 121  Q
    ||||||||| || || |||||||| || ||||| |||||||||| | ||||||||||||| |||||    
T  2845423 caccaacttctcatctcaagcaaacaatctccttcgccacttcctcgtctcaccgttcactcccca 2845488  T

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