View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_25 (Length: 291)
Name: NF9391_low_25
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 14959976 - 14959703
Alignment:
| Q |
12 |
acatcaattcaagttctacctccttatgacttttgaagtatcattggtgaaataatggttactaaactaaaactagtaaatttcaaaaacaagaaaaatc |
111 |
Q |
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| T |
14959976 |
acatcaattcaagttctacctccttatgacttttgaagtaccattggtgaaataatggttactaaacta------gtaaatttcaaaaacaagaaaaatc |
14959883 |
T |
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| Q |
112 |
attaataataaacaagaacggtgtagtacaaaagataggggaatacaacagaaattcaaacagatactttcgacgcatagttttgactcaaaagcaaaag |
211 |
Q |
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| T |
14959882 |
attaataataaacaagaacggtgaagtacaaaagataggggaatacaacataaattcaaacagatactttcgacgcatagttttgactcaaaagcaaaag |
14959783 |
T |
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| Q |
212 |
gaataactgaaaataagaaagaaaatgcaacacataaattgacctaaacaatgtgttcagttcacatgaaattcttagct |
291 |
Q |
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| T |
14959782 |
gaataactgaaaataagaaagaaaatgcaacacataaattgacctaaacaaggtgttcagttcacatgaaattctcagct |
14959703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 2096022 - 2095866
Alignment:
| Q |
81 |
aaactagtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgtagtacaaaagataggggaatacaacagaaattcaaacagatactt |
180 |
Q |
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| T |
2096022 |
aaactggtaaatttgaaaaacaagaaaattcattaataataaataagaacattgcagaacagaagataggagaatacaactgaaatccaaataaacactt |
2095923 |
T |
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| Q |
181 |
tcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaat |
237 |
Q |
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| T |
2095922 |
gcaacacctagttttaactcaaaatcaaaataaattactgaaaataggaaagaaaat |
2095866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 2124013 - 2123857
Alignment:
| Q |
81 |
aaactagtaaatttcaaaaacaagaaaaatcattaataataaacaagaacggtgtagtacaaaagataggggaatacaacagaaattcaaacagatactt |
180 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||| |||||| || || ||| |||||||| ||||||||| ||||| |||| | | |||| |
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| T |
2124013 |
aaactagtaaatttgaaaaacaagaaaattcattaataataaataagaacattgcagaacagaagataggagaatacaactgaaatccaaataaacactt |
2123914 |
T |
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| Q |
181 |
tcgacgcatagttttgactcaaaagcaaaaggaataactgaaaataagaaagaaaat |
237 |
Q |
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| || | ||||||| |||||||| ||||| ||| |||||||||| ||||||||| |
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| T |
2123913 |
gcaacacctagttttaactcaaaatcaaaataaattactgaaaatagaaaagaaaat |
2123857 |
T |
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