View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9391_low_26 (Length: 282)

Name: NF9391_low_26
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9391_low_26
NF9391_low_26
[»] chr6 (4 HSPs)
chr6 (1-261)||(988778-989039)
chr6 (17-88)||(994247-994318)
chr6 (141-178)||(19745341-19745378)
chr6 (145-177)||(24783769-24783801)
[»] chr1 (5 HSPs)
chr1 (138-178)||(40905825-40905865)
chr1 (141-178)||(9922208-9922245)
chr1 (141-178)||(41081256-41081293)
chr1 (141-178)||(15873804-15873841)
chr1 (141-177)||(27446681-27446717)
[»] chr4 (5 HSPs)
chr4 (141-179)||(28485798-28485836)
chr4 (141-179)||(47064042-47064080)
chr4 (141-178)||(23149862-23149899)
chr4 (141-178)||(29728740-29728777)
chr4 (141-178)||(56446881-56446918)
[»] chr8 (3 HSPs)
chr8 (144-178)||(6568582-6568616)
chr8 (145-178)||(26413398-26413431)
chr8 (141-178)||(39162259-39162296)
[»] chr7 (2 HSPs)
chr7 (141-178)||(32002077-32002114)
chr7 (141-174)||(46896124-46896157)
[»] chr5 (1 HSPs)
chr5 (141-178)||(37993624-37993661)
[»] chr3 (3 HSPs)
chr3 (141-178)||(1707272-1707309)
chr3 (141-178)||(20494024-20494061)
chr3 (141-178)||(23944942-23944979)
[»] chr2 (1 HSPs)
chr2 (141-178)||(15997487-15997524)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 988778 - 989039
Alignment:
Q  1 tagtacgagcatatgtttttatatgatggtcacatcttgtaaatgaggcggttgtgatgaatgagttggttgacatggttaagaagatagnnnnnnnnnn 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  988778 tagtacgagtatatgcttttatatgatggtcacatcttgtaaatgaggcggttgtgatgaatgagttggttgacatggttaagaagatagatatataata 988877  T
Q  101 nnnnnnnngatttttaaggttaatttcaaaaaatgggttattttaatgacaaatgttagtattttaattgttatgttaannnnnnncttgataggacttg 200  Q
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||| |||||||||    
T  988878 tataatatgatttttaaggttaatttcaaaaaatgggttattttaatggcaaatgttagtattttaattgttatgttaatttttttcttggtaggacttg 988977  T
Q  201 aattatgacctccaactcattaactcttaa-tgaaaaaatggtaacttcattaattagggat 261  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  988978 aattatgacctccaactcattaactcttaactaaaaaaatggtaacttcattaattagggat 989039  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 994318 - 994247
Alignment:
Q  17 ttttatatgatggtcacatcttgtaaatgaggcggttgtgatgaatgagttggttgacatggttaagaagat 88  Q
    |||||| |||| || |||| || ||||||||| |||||||||||||| | | ||||||||||||||||||||    
T  994318 ttttatttgattgtgacatattataaatgaggtggttgtgatgaatgtggtagttgacatggttaagaagat 994247  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 19745378 - 19745341
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  19745378 ttttaatgacaattgttagtatgttaattgttatgtta 19745341  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 24783769 - 24783801
Alignment:
Q  145 aatgacaaatgttagtattttaattgttatgtt 177  Q
    |||||||||||||||||||||| ||||||||||    
T  24783769 aatgacaaatgttagtattttagttgttatgtt 24783801  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 40905865 - 40905825
Alignment:
Q  138 ttattttaatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  40905865 ttattttaatgacaaatgttagtatgttaattgttatgtta 40905825  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 9922245 - 9922208
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9922245 ttttaatgacaaatgttagtatgttaattgttatgtta 9922208  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 41081293 - 41081256
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41081293 ttttagtgacaaatgttagtattttaattgttatgtta 41081256  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 15873841 - 15873804
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  15873841 ttttaataacaaatgttagtatgttaattgttatgtta 15873804  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 27446717 - 27446681
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtt 177  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  27446717 ttttaatgacaaatgttagtatgttatttgttatgtt 27446681  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 28485836 - 28485798
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgttaa 179  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28485836 ttttaatgacaaatgttagtatgttaattgttatgttaa 28485798  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 47064042 - 47064080
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgttaa 179  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  47064042 ttttaatgacaaatgttagtattttaattgctatgttaa 47064080  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 23149862 - 23149899
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||||||| |||||||||||||||    
T  23149862 ttttaatgacaaatgttagtatgttaattgttatgtta 23149899  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 29728740 - 29728777
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  29728740 ttttaatgacaagtgttagtatgttaattgttatgtta 29728777  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 56446881 - 56446918
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  56446881 ttttaatgacaaatgttagtatgttaattgatatgtta 56446918  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 6568616 - 6568582
Alignment:
Q  144 taatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  6568616 taatgacaaatgttagtatttaaattgttatgtta 6568582  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 26413398 - 26413431
Alignment:
Q  145 aatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||| |||||||||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgtta 26413431  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 39162296 - 39162259
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  39162296 ttttaatggcaaatgttagtatgttaattgttatgtta 39162259  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 32002077 - 32002114
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  32002077 ttttaatggcaaatgttagtatgttaattgttatgtta 32002114  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 46896124 - 46896157
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttat 174  Q
    |||||||||||||||||||||| |||||||||||    
T  46896124 ttttaatgacaaatgttagtatgttaattgttat 46896157  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 37993661 - 37993624
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  37993661 ttttaacgacaaatgttagtatgttaattgttatgtta 37993624  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 1707272 - 1707309
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  1707272 ttttaatgacaaatgttattatgttaattgttatgtta 1707309  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 20494061 - 20494024
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  20494061 ttttaatgacaaatgttagtatgttaattattatgtta 20494024  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 23944942 - 23944979
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  23944942 ttttaatgacaaaggttggtattttaattgttatgtta 23944979  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 15997524 - 15997487
Alignment:
Q  141 ttttaatgacaaatgttagtattttaattgttatgtta 178  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  15997524 ttttaatgaaaaatgttagtatgttaattgttatgtta 15997487  T

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