View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_28 (Length: 281)
Name: NF9391_low_28
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_28 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 42770036 - 42769778
Alignment:
| Q |
1 |
atttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgcttctgatacatatata |
100 |
Q |
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| T |
42770036 |
atttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt----------------------acatatata |
42769959 |
T |
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| Q |
101 |
gtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggc |
200 |
Q |
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| T |
42769958 |
gtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaagatatttttacaaaggc |
42769859 |
T |
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| Q |
201 |
tatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatacttta |
281 |
Q |
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| T |
42769858 |
tatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatacttta |
42769778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 42744031 - 42743908
Alignment:
| Q |
164 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
257 |
Q |
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| T |
42744031 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42743932 |
T |
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| Q |
258 |
gatggtcatggttcacatacttta |
281 |
Q |
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| T |
42743931 |
gaaggtcatggttcacatacttta |
42743908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 42753390 - 42753267
Alignment:
| Q |
164 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
257 |
Q |
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| T |
42753390 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42753291 |
T |
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| Q |
258 |
gatggtcatggttcacatacttta |
281 |
Q |
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| T |
42753290 |
gaaggtcatggttcacatacttta |
42753267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 42734482 - 42734528
Alignment:
| Q |
164 |
taggaagctaattggagcaagatatttttacaaaggctatttggcag |
210 |
Q |
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| T |
42734482 |
taggaagcttattggcgcaagatatttttacaaaggctatatggcag |
42734528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
| Q |
162 |
tataggaagctaattggagcaagatatttttacaaagg |
199 |
Q |
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| T |
42717408 |
tataggaagcttattggagcaagatatttttacaaagg |
42717371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 42717320 - 42717280
Alignment:
| Q |
241 |
atagtgcacgcgactttgatggtcatggttcacatacttta |
281 |
Q |
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| T |
42717320 |
atagtgcacgtgacattgatggtcatggtacacatacttta |
42717280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 23040511 - 23040566
Alignment:
| Q |
226 |
caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatacttta |
281 |
Q |
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| T |
23040511 |
caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatacttta |
23040566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
| Q |
164 |
taggaagctaattggagcaagatatttttacaaaggctatttggca |
209 |
Q |
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| T |
23040443 |
taggaagcttattggagcaagatattttaacaaaggctatctggca |
23040488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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