View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_38 (Length: 252)
Name: NF9391_low_38
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 44312368 - 44312137
Alignment:
| Q |
9 |
gtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44312368 |
gtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactatgc |
44312269 |
T |
|
| Q |
109 |
tttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactctcnnnnnnnnngttg |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
44312268 |
tttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgatctctgattagttagtagtta--ctcattttttttgttg |
44312171 |
T |
|
| Q |
209 |
tgttctgcatttttaacagttgatcctatctctgct |
244 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
44312170 |
tgttctgca--tttaacagttgatcctatctctgct |
44312137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 44301481 - 44301285
Alignment:
| Q |
1 |
cttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaa-----gagaattgatcctacttcgccagttggtttggc |
95 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | | ||| ||||||||||| |||||| ||||||| |
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| T |
44301481 |
cttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctacttacccagtttgtttggc |
44301382 |
T |
|
| Q |
96 |
ttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
193 |
Q |
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|||||| ||||||| || |||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
44301381 |
ttgttagctttgctatgttttgttgcttatttataactta-ttttttatggtaaatctgctgcttaattattgatctctgattagttagtagttactc |
44301285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 43896126 - 43896006
Alignment:
| Q |
10 |
tctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgct |
109 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
43896126 |
tctcataagattctggagagaaattttcaaatggtgtggatggattcattctagggaagtgatcctacttacccagttgctttggcttgttagctttgct |
43896027 |
T |
|
| Q |
110 |
ttggtttgttgcttatttata |
130 |
Q |
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|
|||||||||||||||||||| |
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| T |
43896026 |
atggtttgttgcttatttata |
43896006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 44306581 - 44306459
Alignment:
| Q |
9 |
gtctcaaaagtttctggagagaaatttt-caaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttg |
107 |
Q |
| |
|
|||||| ||| ||||||||||| |||| |||||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||| ||||| |
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| T |
44306581 |
gtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaatgatcctacttacccagttgctttggcttgttagctttg |
44306482 |
T |
|
| Q |
108 |
ctttggtttgttgcttatttata |
130 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
44306481 |
ctatggtttgttgcttatttata |
44306459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 43895946 - 43895902
Alignment:
| Q |
148 |
gaatttgttgcttaattattgatctctgattagttagtagttact |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
43895946 |
gaatttgttgcttaattattgatctctgattatttagtagttact |
43895902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 44306397 - 44306353
Alignment:
| Q |
148 |
gaatttgttgcttaattattgatctctgattagttagtagttact |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44306397 |
gaatttgttgcttaattattgatctctgattatttagtagttact |
44306353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 4084247 - 4084057
Alignment:
| Q |
1 |
cttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgtt |
100 |
Q |
| |
|
|||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
4084247 |
cttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatgatcctactt-accagttggtttggcttgtt |
4084149 |
T |
|
| Q |
101 |
aactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
193 |
Q |
| |
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| |||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084148 |
agctttactatggtttgttgcttatttataactta-ttttttatggtgaatttgttgcttaattattgatctctgattagttagtagttactc |
4084057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8159245 - 8159311
Alignment:
| Q |
1 |
cttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaa |
67 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8159245 |
cttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaa |
8159311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18701739 - 18701618
Alignment:
| Q |
1 |
cttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagaga---attgatcctacttcgccagttggtttggctt |
97 |
Q |
| |
|
|||| ||||||||||||| ||| || | | ||||||||||||||||||| ||||||||| ||||| | ||||||||||| || |||||||||| || |
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| T |
18701739 |
cttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcattctagagaaataatgatcctacttaccctgttggtttggttt |
18701640 |
T |
|
| Q |
98 |
gttaactttgctttggtttgtt |
119 |
Q |
| |
|
||| |||||| ||||||||| |
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|
| T |
18701639 |
attagctttgcaatggtttgtt |
18701618 |
T |
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