View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_40 (Length: 249)
Name: NF9391_low_40
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 54475556 - 54475337
Alignment:
| Q |
18 |
atctcattctatggcacggacacttacctttttagtcatttgtttgagaatgacaatgaaaaaatgatcaactattttggtgtggtaacggtttaagtaa |
117 |
Q |
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| T |
54475556 |
atctcattctatggcacggacacttacctttttagtcatttgtttgagaatgacaatgaaaaaatgatcaactattttggtgtggtaacggtttaagtaa |
54475457 |
T |
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| Q |
118 |
aagtttttcaaactaacacgcaatcaatgtttgatgttgtccaaacaaataaatattcttaatcacattttattcacaataacttcagcactaatagtag |
217 |
Q |
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| T |
54475456 |
aagtttttcaaactaacacgcaatcaatgtttgatgttgtccaaacaaataaa---tcttaatcacattttattcacaataacttcagcactaatagtag |
54475360 |
T |
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| Q |
218 |
cacttgcaattggatgttctctg |
240 |
Q |
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| T |
54475359 |
cacttgcaattggatgttctctg |
54475337 |
T |
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