View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_45 (Length: 243)
Name: NF9391_low_45
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_45 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 32387568 - 32387333
Alignment:
| Q |
8 |
tggtgttgctaacaaggttttccaatacgacctcacctctgataatccccctgctgtcatcggtaaccttagagtggaagctaatgtcctcaacgtcact |
107 |
Q |
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| T |
32387568 |
tggtgttgctaacaaggttttccaatacgacctcacctctgataatccccctgctgtcatcggtaaccttagagtggaagctaatgtcctcaacgtcact |
32387469 |
T |
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| Q |
108 |
ttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagccag |
207 |
Q |
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| T |
32387468 |
ttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagccag |
32387369 |
T |
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| Q |
208 |
gcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
32387368 |
gcaaatggacaccagagaagagaaagaactacaacc |
32387333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37634122 - 37633984
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37634122 |
actttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagc |
37634023 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37634022 |
caggaacatggaccccagagaagaggaagggctacaacc |
37633984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37637036 - 37636898
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37637036 |
actttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagc |
37636937 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37636936 |
caggaacatggaccccagagaagaggaagggctacaacc |
37636898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37639950 - 37639812
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37639950 |
actttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagc |
37639851 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37639850 |
caggaacatggaccccagagaagaggaagggctacaacc |
37639812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37645324 - 37645186
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37645324 |
actttccgtaccttcattgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagc |
37645225 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37645224 |
caggtacatggaccccagagaagaggaagggctacaacc |
37645186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37648237 - 37648099
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37648237 |
actttccgtaccttcattgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagc |
37648138 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37648137 |
caggaacatggaccccagagaagaggaagggctacaacc |
37648099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 37651149 - 37651011
Alignment:
| Q |
105 |
actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc |
204 |
Q |
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| T |
37651149 |
actttccgtaccttcattgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgtcgtcgctggtgagc |
37651050 |
T |
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| Q |
205 |
caggcaaatggacaccagagaagagaaagaactacaacc |
243 |
Q |
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| T |
37651049 |
caggtacatggaccccagagaagaggaagggctacaacc |
37651011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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