View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_50 (Length: 239)
Name: NF9391_low_50
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_50 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 43857979 - 43858206
Alignment:
| Q |
12 |
acatacaacatcacaactcaaaacaattgacgacaaaagaatagaaattgaaactacattaaaaaaccagaaaagtgagataaacaattgttaattaaac |
111 |
Q |
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| T |
43857979 |
acatacaacatcacaactcaatacaattgacgacaaaagaatagaaattgaaactacattaaaaaaccagaaaagtgagataaacaattgttaattaaac |
43858078 |
T |
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| Q |
112 |
catcatttaattaattaacaacagagcacttccttctaatttgtccattcgaaccagtgagaacctcaatagctcccatcctcttcattgactgagaaaa |
211 |
Q |
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| T |
43858079 |
catcatttaattaattaacaacagaacacttccttctaatttctccattcgaaccagtgagaacctcaatagctcccatcctcttcattgactgagaaaa |
43858178 |
T |
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| Q |
212 |
ctcagtgaagaatttgttttgtgaaacc |
239 |
Q |
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| T |
43858179 |
ctcagtgaagaatttgttttgtgaaacc |
43858206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 43859759 - 43859877
Alignment:
| Q |
121 |
attaattaacaacagagcacttccttctaatttgtccattcgaaccagtgagaacctcaatagctcccatcctcttcattgactgagaaaactcagtgaa |
220 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43859759 |
attaattaacaacagagcacttccttctaatttctccattcgaaccagtgagaacctcaatagctcccatcctcttcattgactgagaaaactcagtgaa |
43859858 |
T |
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| Q |
221 |
gaatttgttttgtgaaacc |
239 |
Q |
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| T |
43859859 |
gaatttgttttgtgaaacc |
43859877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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