View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9391_low_54 (Length: 225)

Name: NF9391_low_54
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9391_low_54
NF9391_low_54
[»] chr5 (2 HSPs)
chr5 (65-199)||(290951-291085)
chr5 (6-51)||(294991-295036)
[»] chr3 (4 HSPs)
chr3 (13-123)||(35898860-35898970)
chr3 (14-130)||(35899590-35899707)
chr3 (23-123)||(18753730-18753831)
chr3 (1-60)||(47955242-47955301)
[»] chr7 (4 HSPs)
chr7 (6-130)||(40261425-40261549)
chr7 (9-132)||(47904260-47904383)
chr7 (24-78)||(26789034-26789088)
chr7 (20-60)||(38094720-38094760)
[»] chr8 (2 HSPs)
chr8 (6-67)||(37767499-37767560)
chr8 (12-63)||(32018221-32018272)
[»] chr2 (1 HSPs)
chr2 (12-60)||(26179625-26179673)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 290951 - 291085
Alignment:
Q  65 tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgttaaataactcttgcccatctcttcttccactgttgctaatgtac 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290951 tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgttaaataactcttgcccatctcttcttccactgttgctaatgtac 291050  T
Q  165 tcatgaaaatttattttaattatgcatcttttata 199  Q
    |||||||||||||||||||||||||||||||||||    
T  291051 tcatgaaaatttattttaattatgcatcttttata 291085  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 295036 - 294991
Alignment:
Q  6 gtatttttaaatgacactaacaccccctctagtttttaactaaaca 51  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  295036 gtattcttaaatgacactaacaccccctctagtttttaattaaaca 294991  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 35898860 - 35898970
Alignment:
Q  13 taaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgtatttcacaccgtta 112  Q
    ||||| |||||||||||||||||| ||||||||| |||| |||||||| |||||| ||||| ||||||| ||  ||||||||||  | ||  ||||||||    
T  35898860 taaataacactaacaccccctctattttttaactcaacactaacctcccttattttttattcaaatagacaaccacctcccttttcacttagcaccgtta 35898959  T
Q  113 gtctctgttaa 123  Q
    |||||||||||    
T  35898960 gtctctgttaa 35898970  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 35899707 - 35899590
Alignment:
Q  14 aaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgta-tttcacaccgtta 112  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||| ||| || ||||  ||||||  ||| |||||||||| || ||  |||||||||    
T  35899707 aaattacactaacaccccctctagtttttaactcaacactaacctcccttaattgttatacaaataggcaaacacctccctttatacttaaacaccgtta 35899608  T
Q  113 gtctctgttaaataactc 130  Q
    |||||| |||| ||||||    
T  35899607 gtctctattaattaactc 35899590  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 18753831 - 18753730
Alignment:
Q  23 taacaccccctctagtttttaactaaacaataacctccttta-tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgtt 121  Q
    |||||||||||||| ||||||||| |||| |||||||| ||| ||| ||||| ||||||| ||  ||||||||||  | || ||||||||||||||||||    
T  18753831 taacaccccctctattttttaactcaacactaacctcccttatttttttattcaaatagacaaccacctcccttttcacttaacaccgttagtctctgtt 18753732  T
Q  122 aa 123  Q
    ||    
T  18753731 aa 18753730  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47955242 - 47955301
Alignment:
Q  1 ttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 60  Q
    ||||||| || ||||||  |||||||||||||||||||||| || |||||| ||||||||    
T  47955242 ttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctcc 47955301  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 40261549 - 40261425
Alignment:
Q  6 gtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgtatttcac 105  Q
    ||||| ||| |||||||||||| |||||||||||||||| |||||| |||||||| |||||| || | ||||| || ||  |||||||| ||||| | ||    
T  40261549 gtattcttatatgacactaacatcccctctagtttttaattaaacattaacctcccttatttgttgtctaaatggacaagcacctccctctgtatctaac 40261450  T
Q  106 accgttagtctctgttaaataactc 130  Q
     | ||||||||| ||||||||||||    
T  40261449 gctgttagtctccgttaaataactc 40261425  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 47904260 - 47904383
Alignment:
Q  9 tttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgtatttcacacc 108  Q
    ||||||||| ||||| |||||||||||||||||||| | |||| |||  ||| |||||||||||| ||||||| ||  ||||||||||  | || ||  |    
T  47904260 tttttaaataacactgacaccccctctagtttttaagttaacactaatatcccttatttattattcaaatagacaaccacctcccttttcacttaacgtc 47904359  T
Q  109 gttagtctctgttaaataactctt 132  Q
    |||| |||||||||| ||||||||    
T  47904360 gttactctctgttaattaactctt 47904383  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 26789088 - 26789034
Alignment:
Q  24 aacaccccctctagtttttaactaaacaataacctcctttatttattatttaaat 78  Q
    ||||||||||||||||||||||||||||  ||||||| ||| || ||||| ||||    
T  26789088 aacaccccctctagtttttaactaaacacaaacctcccttaatttttattcaaat 26789034  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 38094720 - 38094760
Alignment:
Q  20 cactaacaccccctctagtttttaactaaacaataacctcc 60  Q
    |||||||||||||||||||||| ||| ||||| ||||||||    
T  38094720 cactaacaccccctctagttttgaacaaaacattaacctcc 38094760  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 37767560 - 37767499
Alignment:
Q  6 gtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttattt 67  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||  ||||||| ||||||    
T  37767560 gtattgttaaataacacaaacatcccctctagtttttaactaaacataaacctcccttattt 37767499  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 32018221 - 32018272
Alignment:
Q  12 ttaaatgacactaacaccccctctagtttttaactaaacaataacctccttt 63  Q
    |||||| |||||||||  ||||||| |||||||||||||| |||||||||||    
T  32018221 ttaaataacactaacattccctctaatttttaactaaacactaacctccttt 32018272  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 26179673 - 26179625
Alignment:
Q  12 ttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 60  Q
    |||||| |||| |||||||||||||||||| |||||||||  |||||||    
T  26179673 ttaaataacacaaacaccccctctagttttaaactaaacacaaacctcc 26179625  T

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