View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9391_low_8 (Length: 467)
Name: NF9391_low_8
Description: NF9391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9391_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 42011879 - 42011429
Alignment:
| Q |
1 |
gaggtagagctttacccttttttgcagcagtaattctcgcttaactttccattcttcttcagctattacctccaaacaaagtgaagttaagttaagtttc |
100 |
Q |
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| T |
42011879 |
gaggtagagctttacccttttttgcagcagtaattctcgcttaactttccattcttcttcagctattacctccaaacaaagtgaagttaagttaagtttc |
42011780 |
T |
|
| Q |
101 |
tatcacgtctttaaagtgctgtaacaatttaattcaggaagagtaactcagaaaagatacctggtgacttggctggttttgtggctgcgctctggactgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011779 |
tatcacgtctttaaagtgctgtaacaatttaattcaggaagagtaactcagaacagatacctggtgacttggctggttttgtggctgcgctctggactgt |
42011680 |
T |
|
| Q |
201 |
aatccctcttgcaaagttcagttgtgatttttgagaagtgggtttgtatgatctcactctgacacaccatgaattttgatcacgtgtaccttctaaggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011679 |
aatccctcttgcaaagttcagttgtgatttttgagaagtgggtttgtatgatctcactctgacacaccatgaattttgatcacgtgtaccttctaaggaa |
42011580 |
T |
|
| Q |
301 |
ggtaccaaggattgtaaatatgatgtggatggatattgtagagcagttgatgtaaaagccatgctttgaagctctcagtttcgacagataaataagataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011579 |
ggtaccaaggattgtaaatatgatgtggatggatattgtagagcagttgatgtaaaagccatgctttgaagctctcagtttcgacagataaataagataa |
42011480 |
T |
|
| Q |
401 |
ttttaagtgtaagtagttagttcaatggaagtacttgggatcagactactg |
451 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42011479 |
ttttaagtttaagtagctagttcaatggaagtacttgggatcagactactg |
42011429 |
T |
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