View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_high_10 (Length: 240)
Name: NF9392_high_10
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6337999 - 6337776
Alignment:
| Q |
1 |
ttctccgtctcacactctcactccttcttatttgttggctgcaggcaagcttttgcatctgcatcggctgataatattaaaaagttcacccttccagaat |
100 |
Q |
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| T |
6337999 |
ttctccgtctcacactctcactccttcttatttgttggctgcatgcaagcttttgcatctgcatcggctgataatattaaaaagttcacccttccagaat |
6337900 |
T |
|
| Q |
101 |
gaaattttcgtcacaatatggtgtgatttcataaacttattcttatcaaacttgtgtgattaggaggatcgttaactataaggtttaccgtatattgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6337899 |
gaaattttcgtcacaatatggtgtgatttcataaacttattcttatcaaacttgtgtgattaggaggatcgttaactataaggtttaccgtatattgtag |
6337800 |
T |
|
| Q |
201 |
aagagaaaaatgaaggtggactgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
6337799 |
aagagaaaaatgaaggtggactgt |
6337776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 14192587 - 14192386
Alignment:
| Q |
25 |
ttcttatttgttggctgcaggcaagcttttgcatctgcatcggctgataatattaaaaagttcacccttccagaatgaaattttcgtcacaatatggtgt |
124 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || | ||| ||||||||||| ||| |
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| T |
14192587 |
ttcttctttgttggctgcaggcaagcttttgcatctgcatcagctgataatattaaaaagttcacccttccaaaaggagaattttgtcacaatatgctgt |
14192488 |
T |
|
| Q |
125 |
gatttcataaacttattcttatcaaacttgtgtgattaggaggatcgttaactataaggtttaccgtatattgtaga--agagaaaaatgaaggtggact |
222 |
Q |
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| T |
14192487 |
gagttcataaacttattcttatcaaacttgtgtggttatggggaacattgactattaggtttaccttttatggtagaagagagaaaaatgaaagtggact |
14192388 |
T |
|
| Q |
223 |
gt |
224 |
Q |
| |
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|| |
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|
| T |
14192387 |
gt |
14192386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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