View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_high_3 (Length: 387)
Name: NF9392_high_3
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 2156199 - 2155996
Alignment:
| Q |
39 |
tatttacacaaatatctaaatgataaaatcttattgaatgtgccaataaaagtatttcatattaattgaagttgcataaagtggtaactcaaccgataaa |
138 |
Q |
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| T |
2156199 |
tatttacacaaatatctaaatgataaaatcttattgaatatgctaataaaattatttgatattaattgaagttgc------tggtaactcaactgataaa |
2156106 |
T |
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| Q |
139 |
aatgttgaaattattaggtcgaatgtcttgatcggaactcaaacctctactcatctatttattgtgtgtgcgtttttaatgactattgttatttcttcat |
238 |
Q |
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| T |
2156105 |
aatgttgaaattattaggtcgaatgtcttgatcggaactcaaacctctactcatccatttattctgtgtgcgtttttaatgactattgttatttcttcat |
2156006 |
T |
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| Q |
239 |
atgccaacat |
248 |
Q |
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| T |
2156005 |
atgccaacat |
2155996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 2155934 - 2155859
Alignment:
| Q |
310 |
gatgatgcaattatacatcaatccgacgtaagcaagaaaactccataagtacatgtcttttttctctgctactcca |
385 |
Q |
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| T |
2155934 |
gatgatgcaattatacatcaatccgacgtaagcaagaaaactccataagtacatgtcttttttttctgttactcca |
2155859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 38157174 - 38157220
Alignment:
| Q |
127 |
tcaaccgataaaaatgttgaaattattaggtcgaatgtcttgatcgg |
173 |
Q |
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| T |
38157174 |
tcaaccgataaaaatgttgaaattgttagatcgaatgttgtgatcgg |
38157220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 39809991 - 39809952
Alignment:
| Q |
131 |
ccgataaaaatgttgaaattattaggtcgaatgtcttgat |
170 |
Q |
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| T |
39809991 |
ccgataaaaatgttgaaattattaggtagaatgttttgat |
39809952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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