View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_high_4 (Length: 386)
Name: NF9392_high_4
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 14916365 - 14915997
Alignment:
| Q |
16 |
aatttcttcatatctcatatgatcatc---ttatttactttgtaatagctatgactctatctcaatcgatcaatatggttgaaaatcacatgtattattt |
112 |
Q |
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| T |
14916365 |
aatttcttcatatctcatatgatcatcatcttatttactttgtaatagttatgact--atcacaatcgatcaatatggttgaaaatcacatgtattattt |
14916268 |
T |
|
| Q |
113 |
aggaaaatttaatagattattccatgcatcattgtaattttcaagtacaacggtaagctaatcaacatcattgtagctttcttgtatcatggtaaacttt |
212 |
Q |
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| T |
14916267 |
aggaaaatttaatagattattccatgcatcattgtaattttcaagtacaatggtaagctaatcaacatcattgtagctttcttgtatcatggtaaacttt |
14916168 |
T |
|
| Q |
213 |
tttataataattaacatcattgcaactttttagtacaatga------annnnnnnngtaatgatcttgaattcatggcctttttaaagtaccacatgatc |
306 |
Q |
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| T |
14916167 |
tttataataattaacatcattgcaactttttagtacaatgatttttttttttttttgtaatgatcttgaattcatggcctttttaaagtaccacatgatc |
14916068 |
T |
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| Q |
307 |
ctctcagtatcacattggtgtcccaatactagctagtacatattcatagtaaacttaatttcaagaataatct |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14916067 |
--ctcactatcacattggtgtcccaatactagctagtacatattcatagtaaacttaatttcaagaataatct |
14915997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 48515976 - 48516190
Alignment:
| Q |
29 |
ctcatatgatcatcttatttactttgtaatagctatgactctatctcaatcgatcaatatggttgaaaatcacatgtattatttaggaaaatttaataga |
128 |
Q |
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| T |
48515976 |
ctcatatgatcatcttatttaatttgtaattgccatggctctatcacaatcgatcgatatggctggaaatcatatttattatttaggaaaatctagcaga |
48516075 |
T |
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| Q |
129 |
ttattccatg---catcattgtaattttcaagtacaacggtaagctaatcaacatcattgtagctttcttgtatcatggtaaacttttttataataatta |
225 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| ||| | || |||||||||| ||| |||||| | | |
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| T |
48516076 |
ttattccatgcatcatcattgtaattttcaaatacattggtaaactaatcaacatcattgtaacttcttaatacaatggtaaactctttgataatagtca |
48516175 |
T |
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| Q |
226 |
acatcattgcaactt |
240 |
Q |
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||||||||| ||||| |
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| T |
48516176 |
acatcattgtaactt |
48516190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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