View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_high_6 (Length: 359)
Name: NF9392_high_6
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 3451543 - 3451391
Alignment:
| Q |
12 |
agagattggtagaagatgtttcgcgtgctcgtgaacatgatcagaacaagagtgttgaagatcacacgacatggacaaaaaaggcataattgaactagta |
111 |
Q |
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| T |
3451543 |
agagattggtagaagatgtttcgcgtgctcgtgaacatgatcagaacaagagtgttgaagatcacacgacatggacaaaaaaggcataatcgaactagta |
3451444 |
T |
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| Q |
112 |
ctagttttcttatctatgaagatatgggagacaggaataataagcatatacac |
164 |
Q |
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| T |
3451443 |
ctagttttcttatctatgaagatatgggagaaaggaataataagcatatacac |
3451391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 3451335 - 3451250
Alignment:
| Q |
256 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaagggtcaatgacattttctatc |
341 |
Q |
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| T |
3451335 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaaggatcaatgacattttctatc |
3451250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 164
Target Start/End: Complemental strand, 3451374 - 3451343
Alignment:
| Q |
133 |
atatgggagacaggaataataagcatatacac |
164 |
Q |
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| T |
3451374 |
atatgggagacaggaataataagcatatacac |
3451343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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