View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_high_7 (Length: 342)
Name: NF9392_high_7
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 46444952 - 46445209
Alignment:
| Q |
1 |
cttattctagaaaggcttgttgatgtcgttgataatgatcctcagagattcttccaccgtatgagaagccgattcgacgcgtaattataccttttccttc |
100 |
Q |
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| T |
46444952 |
cttattctagaaaggcttgttgatgtcgttgataatgatcctgagagattcttccaccgtatgagaagccgattcgacgcgtaattataccttttccttc |
46445051 |
T |
|
| Q |
101 |
atcattccttttttattttcgcaaaatgtagagtactacaacacacgattttcaagcaatcgcgttaattatgtgtttatcaaattggaaatggcgctac |
200 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46445052 |
atcattcctttt-tattttcgcaatatgtagagtactacaacacacgattttcaagcaatcgcgttaattatgtgtttatcaaattggaaatggcgctac |
46445150 |
T |
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| Q |
201 |
ttgtgcttcattttgtttgtttgcgtataagttgatttgcttctttaaagtgaaaagtt |
259 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46445151 |
ttgtgcttcattttgtttgtttacgtataagttgatttgcttctttaaagtgaaaagtt |
46445209 |
T |
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