View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9392_low_1 (Length: 561)

Name: NF9392_low_1
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9392_low_1
NF9392_low_1
[»] chr7 (11 HSPs)
chr7 (28-547)||(322012-322531)
chr7 (457-547)||(1011482-1011572)
chr7 (457-547)||(1012344-1012434)
chr7 (463-533)||(3120743-3120812)
chr7 (457-546)||(22797590-22797679)
chr7 (457-545)||(23839369-23839457)
chr7 (457-546)||(7932358-7932447)
chr7 (462-546)||(29907248-29907332)
chr7 (461-546)||(28369350-28369435)
chr7 (457-546)||(39894867-39894958)
chr7 (457-504)||(38609407-38609454)
[»] chr8 (10 HSPs)
chr8 (28-458)||(18295240-18295688)
chr8 (463-546)||(32593591-32593674)
chr8 (457-547)||(33493808-33493897)
chr8 (457-546)||(18471185-18471274)
chr8 (457-546)||(32051613-32051702)
chr8 (459-547)||(8472744-8472832)
chr8 (459-547)||(8471967-8472055)
chr8 (457-547)||(7066129-7066219)
chr8 (457-544)||(8194435-8194521)
chr8 (460-530)||(541614-541684)
[»] chr4 (14 HSPs)
chr4 (29-252)||(47851002-47851239)
chr4 (457-547)||(39437248-39437338)
chr4 (459-547)||(37079065-37079153)
chr4 (457-547)||(49529560-49529650)
chr4 (457-527)||(37078356-37078426)
chr4 (457-547)||(50848133-50848223)
chr4 (457-546)||(41224005-41224093)
chr4 (457-543)||(44897906-44897992)
chr4 (457-546)||(6848625-6848714)
chr4 (457-533)||(47442031-47442107)
chr4 (457-531)||(22384064-22384138)
chr4 (456-533)||(32476606-32476682)
chr4 (461-517)||(28501848-28501904)
chr4 (295-371)||(47851236-47851312)
[»] chr1 (7 HSPs)
chr1 (457-547)||(1908265-1908355)
chr1 (457-547)||(25104730-25104820)
chr1 (457-547)||(45395870-45395960)
chr1 (457-546)||(32754924-32755013)
chr1 (457-531)||(14613974-14614048)
chr1 (457-546)||(37827917-37828006)
chr1 (271-363)||(26941923-26942015)
[»] chr6 (4 HSPs)
chr6 (271-455)||(32687273-32687457)
chr6 (267-455)||(19810982-19811170)
chr6 (457-546)||(15869362-15869451)
chr6 (295-363)||(14767476-14767544)
[»] chr2 (12 HSPs)
chr2 (460-547)||(24201307-24201394)
chr2 (457-546)||(37469253-37469342)
chr2 (457-547)||(23221034-23221124)
chr2 (459-533)||(33896751-33896825)
chr2 (472-530)||(2007099-2007157)
chr2 (461-547)||(17625818-17625903)
chr2 (457-547)||(17670205-17670294)
chr2 (457-546)||(11493851-11493942)
chr2 (267-314)||(25207812-25207859)
chr2 (496-542)||(25432744-25432790)
chr2 (457-543)||(14931883-14931969)
chr2 (457-518)||(3304647-3304707)
[»] chr5 (7 HSPs)
chr5 (457-547)||(4445542-4445632)
chr5 (457-547)||(4446457-4446548)
chr5 (457-546)||(43432098-43432187)
chr5 (461-518)||(27827527-27827584)
chr5 (460-546)||(7518932-7519018)
chr5 (481-546)||(27828359-27828424)
chr5 (501-533)||(9479572-9479604)
[»] chr3 (5 HSPs)
chr3 (267-455)||(1199457-1199645)
chr3 (457-546)||(20269871-20269960)
chr3 (460-546)||(28767440-28767526)
chr3 (457-523)||(48596784-48596849)
chr3 (466-545)||(40268395-40268474)


Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 28 - 547
Target Start/End: Complemental strand, 322531 - 322012
Alignment:
Q  28 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  322531 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggaatagtagtagtaatattgattgaaatcagcaataaaagtatga 322432  T
Q  128 aagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322431 aagctttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaacatcttaaaacataaaatt 322332  T
Q  228 caaaacaatatacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322331 caaaacaatatacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcc 322232  T
Q  328 tgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322231 tgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatga 322132  T
Q  428 cagacaatgactcaacaccatgttcctcctctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaa 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  322131 cagacaatgactcaacaccatgttcctcctctataatgagatcacacaccttgtatttataatgcctttacaataaatacattgaatgcttatttagtaa 322032  T
Q  528 gcactaacccaggaagttga 547  Q
    ||||||||||||||||||||    
T  322031 gcactaacccaggaagttga 322012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 1011572 - 1011482
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  1011572 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 1011482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 1012434 - 1012344
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  1012434 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 1012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 463 - 533
Target Start/End: Original strand, 3120743 - 3120812
Alignment:
Q  463 atgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcacta 533  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  3120743 atgatatcacacaccttgtatttataatgc-tttacaataaatacattgaatgcttatttagtaagcacta 3120812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 22797679 - 22797590
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | ||||| ||||| |  |||||||||    
T  22797679 tctataatgagatcacacaccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaaacactagcttaggaagttg 22797590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 457 - 545
Target Start/End: Complemental strand, 23839457 - 23839369
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagtt 545  Q
    ||||||||||||||||||| |||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || ||||||||    
T  23839457 tctataatgagatcacacaacttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagtt 23839369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 7932447 - 7932358
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||| ||||||||||||||  |||||| |||||  |||||||||||| | ||||||||||| || |||||||||    
T  7932447 tctataatgagatcacacacattgtatttataatgattttacaataaattaattgaatgcttaatgagtaagcactagcctaggaagttg 7932358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 462 - 546
Target Start/End: Complemental strand, 29907332 - 29907248
Alignment:
Q  462 aatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||| | ||||||||||| ||  ||||||||    
T  29907332 aatgagatcacacaccttgtatttataatggttttacactaaatgcattgaatgcttagtaagtaagcactagccttggaagttg 29907248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 28369435 - 28369350
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||| |||||||||||||||||  |||||| |||||||||||| ||||||  |||||||||||| ||  ||||||||    
T  28369435 taatgagatcacagaccttgtatttataatggttttacaataaatacattgagtgcttaactagtaagcactagcctcggaagttg 28369350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 39894958 - 39894867
Alignment:
Q  457 tctataatgagatcacacac--cttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||| ||||| ||||||||||||| | |||| |||||| || |||||||||    
T  39894958 tctataatgagatcacacacaccttgtatttataacgattttacaataaatgcattgaatgcttaatgagtaggcactagcctaggaagttg 39894867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 38609454 - 38609407
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaa 504  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  38609454 tctataatgagatcacacaccttgtatttataatggttttacaataaa 38609407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 458
Target Start/End: Original strand, 18295240 - 18295688
Alignment:
Q  28 gaattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatgga---gtagtagtagtaatattgattgaaatcagcaataaaagta 124  Q
    |||||||| ||||||||||||||||||||||||||| |||   || |||||||||||   ||||||||||||||||||||| |||||||||| |||||||    
T  18295240 gaattaattgaatggcagtaaataggagaatagcagcactc--ggaatttatatggaatagtagtagtagtaatattgatttaaatcagcaacaaaagta 18295337  T
Q  125 tgaaagct--------------------ttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatat 204  Q
    ||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18295338 tgaaagctgagaattgaaattacaaaatttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggttcatat 18295437  T
Q  205 tcaacatcttaaaacataaaattcaaaacaatatacagacatcactcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgact 304  Q
     |||| |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||   ||||||||| |||||||||||||||||||||||||    
T  18295438 ccaacttcttcaaacataaaactcaaaacaatatacagacatcactcaggctgtgaactata---ttgcctgacctttctccgcttacgcctcaatgact 18295534  T
Q  305 ggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctgcatacttgggattctgttcaattgaattaatttc 404  Q
     ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||   ||||||||||||| ||||||||| |    
T  18295535 tgtactgagtcgcaggcgtggcctgagctacaatctgtttcatagccatgtataaaggagtgtctgcgtactcctgattctgttcaatggaattaattgc 18295634  T
Q  405 caaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctcctc 458  Q
    || ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  18295635 cagggccctgatcctgcagatgacagacaatggctcaacaccatgttcctcctc 18295688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 463 - 546
Target Start/End: Complemental strand, 32593674 - 32593591
Alignment:
Q  463 atgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||||||||||||| || |||||||||    
T  32593674 atgagatcacacaccttgtatttataatggttttataataaatacattgaatgcttaattagtaagcactagcctaggaagttg 32593591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 457 - 547
Target Start/End: Original strand, 33493808 - 33493897
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| |||||||||||||||  |||||| |||||||||||||||| |||||||||||||||| || || |||||||    
T  33493808 tctataatgagatcacacatcttgtatttataatgattttacaataaatacattgaatgc-tatttagtaagcactagcctagaaagttga 33493897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 18471185 - 18471274
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||||||||||  |||||  ||||| ||||||||||||| | ||||||||||| || |||||||||    
T  18471185 tctataatgagatcacacaccttgtatttataatggttttacgataaatgcattgaatgcttaatgagtaagcactaccctaggaagttg 18471274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 32051613 - 32051702
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||| |||| |||||||||||||||||||  |||||| ||||||||||||| ||||| ||||||||||||| || |||||||||    
T  32051613 tctataatgatatcatacaccttgtatttataatggttttacaataaatacattgaacgcttaattagtaagcactagcctaggaagttg 32051702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 459 - 547
Target Start/End: Complemental strand, 8472832 - 8472744
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||||||||||||||||||||  |||||| ||  | ||||||||||||| ||||||||||||| || | ||||||||    
T  8472832 tataatgagatcacacaccttgtatttataatggttttacaataggtgcattgaatgcttaattagtaagcactagcctaagaagttga 8472744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 547
Target Start/End: Complemental strand, 8472055 - 8471967
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||| ||||||||||||||||||||||||  |||| | ||| | ||||||||||||| ||||||||||||| || ||| ||||||    
T  8472055 tataatgaaatcacacaccttgtatttataatggttttagaataagtgcattgaatgcttaattagtaagcactagcctagggagttga 8471967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 457 - 547
Target Start/End: Original strand, 7066129 - 7066219
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||||||||||||| ||||||||  |||||| | | | |||||||| |||  ||||||||||||| || ||||||||||    
T  7066129 tctataatgagatcacacaccttgtaattataatgattttacaattagtgcattgaatacttcattagtaagcactagcctaggaagttga 7066219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 544
Target Start/End: Complemental strand, 8194521 - 8194435
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagt 544  Q
    ||||||||||||||||||   ||||||||||||||   ||||| ||| | ||||||||||||| ||||||||||||| || |||||||    
T  8194521 tctataatgagatcacacta-ttgtatttataatggtgttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagt 8194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 530
Target Start/End: Original strand, 541614 - 541684
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagca 530  Q
    |||||||||||||||| ||| ||||||||||   |||||| ||||| |||| |||||||| ||||||||||    
T  541614 ataatgagatcacacaacttctatttataattgttttacaataaatgcattcaatgcttaattagtaagca 541684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 47851002 - 47851239
Alignment:
Q  29 aattaatggaatggcagtaaataggagaatagcagtacttaggggatttatatggagtagtagtagtaatattgattgaaatcagcaataaaagtatgaa 128  Q
    ||||||||||||||||| ||||||||||||||||||||  | || || |||||||| |||||| ||||||||||||||||||| | || |||||||||||    
T  47851002 aattaatggaatggcagcaaataggagaatagcagtacccaaggaatatatatggaatagtagcagtaatattgattgaaatctggaacaaaagtatgaa 47851101  T
Q  129 agct--------------------ttcataaatccattcaaatgtcataacgaccaagtacataggttcataaggaccaactacataggtttatattcaa 208  Q
    ||||                    |||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||| |||| |||    
T  47851102 agctgagaattgaaattacaaaatttcataaatccattcaaatgtcata----ccaagtacataggttcataaggaccaaccacataggttcatatccaa 47851197  T
Q  209 catcttaaaacataaaattcaaaacaatatacagacatcactca 252  Q
      ||||||||||||||| ||  ||||||||||||||||||||||    
T  47851198 attcttaaaacataaaactc--aacaatatacagacatcactca 47851239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 39437338 - 39437248
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  39437338 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 39437248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 459 - 547
Target Start/End: Complemental strand, 37079153 - 37079065
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||||    
T  37079153 tataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcagtagcctaggaagttga 37079065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 49529650 - 49529560
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||| | ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| || ||||||||||    
T  49529650 tctataatgagatcacaaagcttgtatttataatggctttaccataaatacattgaatgcttatttagtaagcactagcctaggaagttga 49529560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 37078426 - 37078356
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaa 527  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37078426 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaa 37078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 547
Target Start/End: Original strand, 50848133 - 50848223
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||| |||||||||| ||||||| |||||||  |||||||||||||||||| ||||||||||||| || ||||||||||    
T  50848133 tctataatgagatcactcaccttgtatctataatggctttacaaaaaatacattgaatgcttaattagtaagcactagcctaggaagttga 50848223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 41224093 - 41224005
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||| |||||||||||| |||  |||||| ||||||||||||||||||||||||| ||||||| || |||||||||    
T  41224093 tctataatgagatcacac-ccttgtatttatgatggttttacaataaatacattgaatgcttatttagtgagcactagcctaggaagttg 41224005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 543
Target Start/End: Original strand, 44897906 - 44897992
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaag 543  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||| | ||||||||||||| | |||||| |||| || ||||||    
T  44897906 tctataatgagatcacacaccttgtatttataatggttttacaataagtgcattgaatgcttaatgagtaagaactagcctaggaag 44897992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 6848625 - 6848714
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||||||||||||||  |||||  |||||| ||||| || |||||||||| | ||||||||||| || |||||||||    
T  6848625 tctataatgagatcacacaccttgtattattaatggttttacaataaatgcaatgaatgcttaatgagtaagcactagcctaggaagttg 6848714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 533
Target Start/End: Original strand, 47442031 - 47442107
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcacta 533  Q
    ||||||| |||||||||| | ||||||||| ||||  |||||| ||||| ||||||||||||| |||||||||||||    
T  47442031 tctataacgagatcacactctttgtatttacaatggttttacaataaatgcattgaatgcttaattagtaagcacta 47442107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 531
Target Start/End: Complemental strand, 22384138 - 22384064
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcac 531  Q
    ||||| |||||| ||||||||||||||||||||||  | || | ||||||||||||||||||| ||| |||||||    
T  22384138 tctatgatgagaccacacaccttgtatttataatggttgtagaataaatacattgaatgcttaattaataagcac 22384064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 32476606 - 32476682
Alignment:
Q  456 ctctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcacta 533  Q
    ||||||||||||||||||| |||| |||||||| ||  |||||| ||||| |||||||||| |||||||| |||||||    
T  32476606 ctctataatgagatcacac-ccttctatttatagtgggtttacaataaatgcattgaatgcatatttagtgagcacta 32476682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 517
Target Start/End: Original strand, 28501848 - 28501904
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgct 517  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||| |||| ||||||    
T  28501848 taatgagatcacacaccttgtatatataatggttttacaataaatgcattaaatgct 28501904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 47851236 - 47851312
Alignment:
Q  295 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctgc 371  Q
    |||| ||||||||||||| | |||| | |||| |  ||||||||| ||| |||||||||||||||  ||||||||||    
T  47851236 ctcagtgactggtactgaatcgcaggcgtggcataggctacaatcagtttcatagccatgtataagtgattgtctgc 47851312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 1908355 - 1908265
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  1908355 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 1908265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Original strand, 25104730 - 25104820
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  25104730 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 25104820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 45395960 - 45395870
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  45395960 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 45395870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 32754924 - 32755013
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||| || |||||||||    
T  32754924 tctataatgagatcacacaccttgtatttataatggttttacaataaataaattgaatgcttatttagtaagcactacccaaggaagttg 32755013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 531
Target Start/End: Complemental strand, 14614048 - 14613974
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcac 531  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||| | ||| ||||||||||||||||    
T  14614048 tctataatgagatcacacagcttgtatttataatggctttacaataaatacactaaatacttatttagtaagcac 14613974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 37828006 - 37827917
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||  |||| |||||||| | ||||||||||| || |||||||||    
T  37828006 tctataatgagatcacacaccttgtatttataatggttttacaataaaagcattcaatgcttaataagtaagcactagcctaggaagttg 37827917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 26942015 - 26941923
Alignment:
Q  271 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 363  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | || | |||| ||||||| |||| | |||||||| ||||||||||||    
T  26942015 tgcctgacatttctccgcttacgcatcaacgactggtactgagtggtaggcgtggcatgagctataatccgctccatagcaatgtataaagga 26941923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 271 - 455
Target Start/End: Original strand, 32687273 - 32687457
Alignment:
Q  271 tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattgtctg 370  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||||| |||||||||||| |  |||    
T  32687273 tgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcaatgtataaaggagtacctg 32687372  T
Q  371 catacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
    ||  ||  | |||||||||||| ||| ||||| ||| | |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  32687373 caagctctgaattctgttcaatggaagtaattgccaggtccttgattctgcacatggcagtcaatggatcaacaccatgttcctc 32687457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 19810982 - 19811170
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||  ||||||| |||||| |||||||| |||||||||||| |     
T  19810982 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggaatgagctataatctgctccatagcaatgtataaaggagta 19811081  T
Q  367 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  19811082 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 19811170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 15869362 - 15869451
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||| ||||| ||||||||||||||||  |||||| ||||||||||||||||||| | ||||||||||| || | |||||||    
T  15869362 tctataatgagaacacacgccttgtatttataatggttttacaataaatacattgaatgcttaatgagtaagcactagcctatgaagttg 15869451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 14767476 - 14767544
Alignment:
Q  295 ctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga 363  Q
    |||||||||  ||||||||| |||   || ||||||||||||||||  |||||| ||||||||||||||    
T  14767476 ctcaatgacaagtactgagtggcaagtatagcctgagctacaatctcctccatatccatgtataaagga 14767544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 24201394 - 24201307
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  24201394 ataatgagatcacacagcttgtatttataatggctttacaataaatacattgaatgcttatttagtaagcactagcctaggaagttga 24201307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 37469253 - 37469342
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||| || ||||||||||||||  |||||| ||||||||||||||||||| ||| ||||||||| || |||||||||    
T  37469253 tctataatgagatcacagactttgtatttataatggttttacaataaatacattgaatgcttaattaataagcactagcctaggaagttg 37469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 23221124 - 23221034
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||||||||||||||||||||||  ||| | |||| | ||||||||||||| ||||||||||||| |  ||||||||||    
T  23221124 tctataatgagatcacacaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagttga 23221034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 459 - 533
Target Start/End: Original strand, 33896751 - 33896825
Alignment:
Q  459 tataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcacta 533  Q
    |||||||||||| ||||||||||||||||||||  || ||| ||||||||||||||||||| |||||||||||||    
T  33896751 tataatgagatcgcacaccttgtatttataatggtttaacaataaatacattgaatgcttaattagtaagcacta 33896825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 2007099 - 2007157
Alignment:
Q  472 cacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagca 530  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||| ||||||||||    
T  2007099 cacaccttgtatttataatggttttacaataaatacatcgaatgcttaattagtaagca 2007157  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 547
Target Start/End: Complemental strand, 17625903 - 17625818
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||   ||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || ||||||||||    
T  17625903 taatgagatcacacta-ttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttga 17625818  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 17670294 - 17670205
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    |||||||||||||||| |   ||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||||| || ||||||||||    
T  17670294 tctataatgagatcacgcta-ttgtatttataatggttttacaataagtgcattgaatgcttaattagtaagcactagcctaggaagttga 17670205  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 11493942 - 11493851
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaa-tacattgaatgc-ttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||| ||||||||||||||||||||||  ||| || |||| | |||||||||| ||| | ||||||||||| || |||||||||    
T  11493942 tctataatgagaccacacaccttgtatttataatggttttgcaataaagtgcattgaatgctttaatgagtaagcactagcctaggaagttg 11493851  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 25207859 - 25207812
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagt 314  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  25207859 atattgcctgacatttctccgcttacgcttcaacgactgatactgagt 25207812  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 25432744 - 25432790
Alignment:
Q  496 tacagtaaatacattgaatgcttatttagtaagcactaacccaggaa 542  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||    
T  25432744 tacaataaatacattgaatgcttatttagtaagcactagcctaggaa 25432790  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 543
Target Start/End: Original strand, 14931883 - 14931969
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaag 543  Q
    |||||||||||||||||||  ||||| || |||||  |||||| ||||| ||||| ||| ||| | ||||||||||| || ||||||    
T  14931883 tctataatgagatcacacatgttgtacttttaatggttttacaataaatgcattgcatgtttaatgagtaagcactagcctaggaag 14931969  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 3304707 - 3304647
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgctt 518  Q
    ||||||||||| ||||||||||||||||||| |||  |||||| ||| | ||||||||||||    
T  3304707 tctataatgaggtcacacaccttgtatttat-atggttttacaataattgcattgaatgctt 3304647  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 4445632 - 4445542
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| || ||||||||||    
T  4445632 tctataatgagatcacacagcttgtatttataatggctttacaataaatacattaaatgcttatttagtaagcactagcctaggaagttga 4445542  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 457 - 547
Target Start/End: Complemental strand, 4446548 - 4446457
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaat-gcttatttagtaagcactaacccaggaagttga 547  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||    
T  4446548 tctataatgagatcacacagcttctatttataatggctttacaataaatacattgaatggcttatttagtaagcactagcctaggaagttga 4446457  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 43432098 - 43432187
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||||||||||||  ||||    |||||| ||||| ||||||||||||| | ||||||||||| || |||||||||    
T  43432098 tctataatgagatcacacaccttgtatgcataactgttttacaataaattcattgaatgcttaatcagtaagcactagcctaggaagttg 43432187  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 518
Target Start/End: Original strand, 27827527 - 27827584
Alignment:
Q  461 taatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgctt 518  Q
    |||||||||||||||||||||||||||||||  |||||| |||| | |||||||||||    
T  27827527 taatgagatcacacaccttgtatttataatggttttacaataaacaaattgaatgctt 27827584  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 7519018 - 7518932
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||  |||||||||||||||||| |  |||||| ||||  ||||||| ||||| | ||||||||||| || |||||||||    
T  7519018 ataatgagattgcacaccttgtatttataacggttttacaataaaagcattgaaagcttaataagtaagcactagcctaggaagttg 7518932  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 27828359 - 27828424
Alignment:
Q  481 tatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||  |||||| ||||| ||||||||||||| | || |||||||| || |||||||||    
T  27828359 tatttataatggttttacaataaatgcattgaatgcttaataagaaagcactagcctaggaagttg 27828424  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 533
Target Start/End: Original strand, 9479572 - 9479604
Alignment:
Q  501 taaatacattgaatgcttatttagtaagcacta 533  Q
    ||||||||||||||||||||||||||| |||||    
T  9479572 taaatacattgaatgcttatttagtaaacacta 9479604  T

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Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 1199457 - 1199645
Alignment:
Q  267 atattgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaaggattg 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||| | |||||||||||| |     
T  1199457 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccataacaatgtataaaggagta 1199556  T
Q  367 tctgcatacttgggattctgttcaattgaattaatttccaaggcactgatcctgcagatgacagacaatgactcaacaccatgttcctc 455  Q
     |||||  ||| | |||||||||||| |||  |||| |||   |  |||| ||||| ||| ||| |||||  |||||||||||||||||    
T  1199557 cctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatcaacaccatgttcctc 1199645  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 20269871 - 20269960
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    ||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||| |||| |||||||||||||||| |||||||||    
T  20269871 tctataatgagatcacacaccttgtatctataatgattttacaataaatacattgaatacttaattagtaagcactaacctaggaagttg 20269960  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 28767440 - 28767526
Alignment:
Q  460 ataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagttg 546  Q
    |||||||||||||||||| |||||||||||||  |||||| |||||  |||||||||||| | ||||||||||| || |||||||||    
T  28767440 ataatgagatcacacaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagttg 28767526  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 48596784 - 48596849
Alignment:
Q  457 tctataatgagatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttattta 523  Q
    |||||||||||||||||| |||| |||||||||||  | |||| ||||||| |||||||||||||||    
T  48596784 tctataatgagatcacac-ccttctatttataatggttatacaataaatactttgaatgcttattta 48596849  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 40268474 - 40268395
Alignment:
Q  466 agatcacacaccttgtatttataatgcctttacagtaaatacattgaatgcttatttagtaagcactaacccaggaagtt 545  Q
    |||||||||| ||||||||||||||  | ||||| |||||| |||||||| ||| | | |||||||||||| | ||||||    
T  40268474 agatcacacaacttgtatttataatagcgttacaataaatagattgaatggttaatgaataagcactaacctatgaagtt 40268395  T

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