View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_13 (Length: 371)
Name: NF9392_low_13
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 32 - 359
Target Start/End: Complemental strand, 47386384 - 47386046
Alignment:
| Q |
32 |
aaagtaacgataataactaccgacaagactatagtttatgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa------- |
124 |
Q |
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| T |
47386384 |
aaagtaacgataataactaccgacaagactatagtttatgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaa |
47386285 |
T |
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| Q |
125 |
--tatttaaatcttgtatttt--attaatacatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttca |
220 |
Q |
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| T |
47386284 |
aatatttaaatcttgtattttttattaatacatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattca |
47386185 |
T |
|
| Q |
221 |
ccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttct |
320 |
Q |
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| T |
47386184 |
ccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttct |
47386085 |
T |
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| Q |
321 |
cacatgcaacaacttcttctagttccaccttctctgctt |
359 |
Q |
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| T |
47386084 |
cacatgcaacaacttcctctagttccaccttctctgctt |
47386046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 266
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
75 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
173 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
174 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
266 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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