View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9392_low_14 (Length: 368)
Name: NF9392_low_14
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_14 |
 | |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 1237096 - 1236742
Alignment:
| Q |
1 |
ggtggtctctcaagtgtccaacccttcatagaatgtgtgtgtgt--atcacgcggtccatttgtataaaattcaagagattaaaacattgaaagagattg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1237096 |
ggtggtctctcaagtgtccaacccttcatagaatgtgtgtgtgtgtatcacgcggtccatttgtataaaattcaagagattaaaacatggaaagagattg |
1236997 |
T |
|
| Q |
99 |
ttggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcgtat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236996 |
ttggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcgtat |
1236897 |
T |
|
| Q |
199 |
aggtggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggc-attgtt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1236896 |
aggtggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtt |
1236797 |
T |
|
| Q |
298 |
tttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttattagatt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236796 |
tttgcagtctagttgtcctttcagcagaaaatattggttgaaaggttattagatt |
1236742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 344
Target Start/End: Original strand, 897365 - 897691
Alignment:
| Q |
3 |
tggtctctcaagtgtccaacccttcatagaatgtgtgtgtgtatcacgcggtccatttgtataaaattcaagagattaaaacattgaaagagattgtt-g |
101 |
Q |
| |
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|||| |||||||| || |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| | |
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|
| T |
897365 |
tggtttctcaagtctcaaacccttcgtagaacatgtgtgtgtatcacgtggtccatttgtataaaattcaagtgattaaaacatggaaagagattgtttg |
897464 |
T |
|
| Q |
102 |
gtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcgtatagg |
201 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| | |||| || |||||||||||||||||||| |||||||| |
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|
| T |
897465 |
gcagtagattgtcagtagtacggtgtccccctccccaaaatgtttggaaatggaatgtggatagatcatcgaaagggaagccgggagctgcacgtatagg |
897564 |
T |
|
| Q |
202 |
tggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggc-attgttttt |
300 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||| |||||||||||| ||||||| |||||||||||||| | ||||||||| |
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| T |
897565 |
tggtgtgctgaggaattcattgtgagagatgtagc-----------------tttggtttaaaagactcaaataaatctgagtttaagacaattgttttt |
897647 |
T |
|
| Q |
301 |
gcagtctagttgtcctttcagcagaaaatattggttgaaaggtt |
344 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
897648 |
gcagtttagttttcctttcaacagaaaatattggttgaaaggtt |
897691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1182662 - 1183005
Alignment:
| Q |
1 |
ggtggtctctcaagtgtccaacccttcatagaatgtgtgtgtgtatcacgcggtcca-----tttgtataaaattcaagagattaaaacattgaaagaga |
95 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | | |
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|
| T |
1182662 |
ggtggtctctcaagtctcaaacccttcatagaatatgtgtgtgtatcacgcggtccaatatatttgtataaaattcaagagattaaaacatggaaaaata |
1182761 |
T |
|
| Q |
96 |
ttgttggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcg |
195 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
1182762 |
ttgttgg--------------cagtatggtgtccccctccacaaaatgttttgaaatggaatgtggatagatcgtcgaaagggaagccgggagctgcgcg |
1182847 |
T |
|
| Q |
196 |
tataggtg--------gtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagttta |
287 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
1182848 |
tataggaattttatatgtgtgctgaggaattcattgtgagagatgaagccgatgtttgtaacatcaattggtttaaaagactcaaacgaatctgagttta |
1182947 |
T |
|
| Q |
288 |
aggc-attgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggtt |
344 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
1182948 |
aggcaattctttttgcagtctagcggtcctttcaaaagaaaatattggttgaaaggtt |
1183005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1193601 - 1193938
Alignment:
| Q |
1 |
ggtggtctctcaagtgtccaacccttcatagaatg----tgtgtgtgtatcacgcggtcca---tttgtataaaattcaagagattaaaacattgaaaga |
93 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |
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|
| T |
1193601 |
ggtggtctctagagtctcaaacccttcattgaatgaatatgtgtgtgtatcacgcggtccaatatttgtataaaattcaagagattaaaacatggaaaaa |
1193700 |
T |
|
| Q |
94 |
gattgttggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcg |
193 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||| |
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|
| T |
1193701 |
gattgttgg--------------cagtatggtgtccccctccacaaaatgttttgaaatggaatgtggatggatcgtcaaaagggaagctgggagttgcg |
1193786 |
T |
|
| Q |
194 |
cgtataggtggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggc-a |
292 |
Q |
| |
|
|||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| | |||||||| | |
|
|
| T |
1193787 |
tgtattggttgtgtgctgaggaattctttgtgtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggcta |
1193886 |
T |
|
| Q |
293 |
ttgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaaggtt |
344 |
Q |
| |
|
||||||||||||| || |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1193887 |
ttgtttttgcagtttaattgtccattcaacagaaaatattggttgaaaggtt |
1193938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 19859 - 20184
Alignment:
| Q |
1 |
ggtggtctctcaagtgtccaacccttcatagaatgtgtgtgtgtatcacgcggtccatttgtataaaattcaagagattaaaacattgaaagagattgtt |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
19859 |
ggtggtctctcaagtctcaaacccttcatagaatatgtgt----atcacgtggtccatttgtataaaactcaagagattaaaacatggaaagagat---- |
19950 |
T |
|
| Q |
101 |
ggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcgtatag |
200 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
19951 |
----------tgtcagcaatacgttgtccccctccacaaaatgtttggtaatggaatgtggatggatcgttgaaagggaagctgggagctgcaggtatag |
20040 |
T |
|
| Q |
201 |
gtggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggc-attgtttt |
299 |
Q |
| |
|
||||| || |||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
20041 |
gtggtgtgttgaggatttcattgtgagagatgaagctgatgtttgtgacatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttt |
20140 |
T |
|
| Q |
300 |
tgcagtctagttgtcctttcagcagaaaatattggttgaaaggtt |
344 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
20141 |
tgcagtctagttttcctttca-aaataaatattggttgaaaggtt |
20184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 20257127 - 20256862
Alignment:
| Q |
1 |
ggtggtctctcaagtgtccaacccttcatagaatgtgtgtgtgtatcacgcggtccatttgtataaaattcaagagattaaaacattgaaagagattgtt |
100 |
Q |
| |
|
||||||||||||||| || |||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20257127 |
ggtggtctctcaagtctcaaacctttcatagaatatgtgt----atcacgtggtccatttgtataaaattcaagagattaaaacatggaaa--------- |
20257041 |
T |
|
| Q |
101 |
ggtagtagattgtcagcagtacggtgtccccctccacaaaatgtttgaaaatggaatgtggttggatcgtcaaaagggaagccgggagctgcgcgtatag |
200 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
20257040 |
-----tagattgtcagcaatatggtgtccccctccacaaaatgtttggtaatggaatgtggatggatcgttgaaagggaagccgggagctgcagatatag |
20256946 |
T |
|
| Q |
201 |
gtggtctgctgaggaattcattgtgtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagt |
284 |
Q |
| |
|
|| || || | |||| |||||||| ||||||| || |||||||| ||||||||||| ||||||| ||||||||||||||||| |
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| T |
20256945 |
gttgtgtgttaaggatttcattgttagagatgaggctgatgtttgggacatcaattggcttaaaagactcaaatgaatctgagt |
20256862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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