View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_15 (Length: 364)
Name: NF9392_low_15
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_15 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 11702 - 11351
Alignment:
| Q |
1 |
cattctgagttaaattcgaccagtttactctatatgctactgcttgaataaatattaatgcaaattgagacaatgatgaaacataaaggccattgcttct |
100 |
Q |
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| T |
11702 |
cattctaagttaaattcgaccagtttactctatatgctactgcttgaataaatattaatacaaattgagacaatgatgaaacataaaggccattgcttct |
11603 |
T |
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| Q |
101 |
cttcatttcatcatcaatgggtccagtacaaacatataatagagaacaaacttctactaattaagaaggaaatacaacttgttagacaaaacataatgaa |
200 |
Q |
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| T |
11602 |
cttcatttcatcatcaatgggtccagtataaacatataatagagaacaaacttctactaattaagaaggaaatacaacttgttagacaaaacataatgaa |
11503 |
T |
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| Q |
201 |
aatactaaatgaagatagggattactaaagacataa----------aaaaccaaaacaacttagaaatagacaaagtcttgccaatttaaatcagtccac |
290 |
Q |
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| T |
11502 |
aatactaaatgaagatagggattactaaagacataaaaaaacgaaaaaaaccaaaacaacttagaaatagacaaagtcttgccaatttaaatcagtccac |
11403 |
T |
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| Q |
291 |
acttgcagattatcgttacttcgaacaaccggtgcaccaaaccatcacattag |
343 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11402 |
acttgcagagtatcgttacttcgaacaaccggtgcacc-aaccatcacattag |
11351 |
T |
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