View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_19 (Length: 358)
Name: NF9392_low_19
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_19 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 22219 - 22559
Alignment:
| Q |
17 |
agtagacacaacgccattatcttttataattgcttgatctccaaatttcattttgctagttgagtttaaaaatgaaggaaccaaacaataggagaatttg |
116 |
Q |
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| T |
22219 |
agtagacacaacgccattatcttttataattgcttcatctccaaatttcattttgctaattgagtttaaacttggaggaaccaaacaataggagaatttg |
22318 |
T |
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| Q |
117 |
tgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaagacccgtagcttttcggcttcttttaaatgtgacatcat |
216 |
Q |
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| T |
22319 |
tgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaagacccgtagcttttcggcttcttttaaatgtgacatcat |
22418 |
T |
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| Q |
217 |
ttcgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctccaaagttgatggaatcagtacccaaatctccaatggtgtaagatttatc |
316 |
Q |
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| T |
22419 |
tttgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctccaaagttgatggaatcagtacccaaatctccaatggtgtaagatttatc |
22518 |
T |
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| Q |
317 |
accataagtgtaaaaatactcacacttctctgcttctccac |
357 |
Q |
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| T |
22519 |
accataagtgtaaaaatactcacacttatttgattctccac |
22559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 14181 - 14432
Alignment:
| Q |
17 |
agtagacacaacgccattatcttttataattgcttgatctccaaatttcattttgctagttgagtttaaaaatgaaggaaccaaacaataggagaatttg |
116 |
Q |
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| T |
14181 |
agtagacacaacaccattgccttttataattgcttgatctccaaatttcaatttgctagtcgagtttgaaccgaaaggaaccaaacaataagagaatttt |
14280 |
T |
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| Q |
117 |
tgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaagacccgtagcttttcggcttcttttaaatgtgacatcat |
216 |
Q |
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| T |
14281 |
cgaccaatagaatcgcctagttgtgaaactagggacaatggccctagtcctagaccaacaatacctgtggttttatgactagtttcagaccctagatcat |
14380 |
T |
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| Q |
217 |
ttcgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctcc |
268 |
Q |
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| T |
14381 |
tttgaagtccacatccaaaaactgattttggaaatgtaacatctttttctcc |
14432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 41385 - 41298
Alignment:
| Q |
91 |
aaggaaccaaacaataggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaag |
178 |
Q |
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| T |
41385 |
aaggaaccaaacaatacgagaattttcgaccgatagaatgacctagttgcgaaactagtgacaatggtcctgctcctaaaccaacaag |
41298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 26464468 - 26464555
Alignment:
| Q |
91 |
aaggaaccaaacaataggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaag |
178 |
Q |
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| T |
26464468 |
aaggaaccaaacaataagagaattttcgaccgatggaatgacctagttgtgaaactagtgaaaatggtcctgctcctagaccaacaag |
26464555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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