View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_22 (Length: 317)
Name: NF9392_low_22
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 16639942 - 16640157
Alignment:
| Q |
7 |
gaagcagagaaggaattaggaagacaaaaagcatcaggttgttgtccttattgtggtggcaaagttgaagctatggatgttgaaatgcaatggaggtttt |
106 |
Q |
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| T |
16639942 |
gaagaagagaaggaattaggaagacaaaaagcatcaggttgttgtccttattgtggtggcaaagttgaagctatggatgttgagatgcaatggaggtttt |
16640041 |
T |
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| Q |
107 |
gttttttgcctatgtgttttaagatcaagaggaagnnnnnnngtactttgtgtgctagaaggttagaattgcagtattactaggttgttttgttggacat |
206 |
Q |
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| T |
16640042 |
gttttttgcctatgtgttttaagattaagaggaagtttttttgtactttgtgtgctagaaggttagaattgcagtattactaggttgtttttttggacat |
16640141 |
T |
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| Q |
207 |
taatttagtcatgttc |
222 |
Q |
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| T |
16640142 |
taatttagtcatgttc |
16640157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 52764873 - 52764803
Alignment:
| Q |
19 |
gaattaggaagacaaaaagcatcaggttgttgtccttattgtggtggcaaagttgaagctatggatgttga |
89 |
Q |
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| T |
52764873 |
gaattgggaagacaacaagcacctggttcttgtccttattgtggtggcaaagttgaagccatggatgttga |
52764803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 52770881 - 52770756
Alignment:
| Q |
14 |
agaaggaattaggaagacaaaaagcatcaggttgttgtccttattgtggtggcaaagttgaagctatggatgttgaaatgcaatggaggttttgtttttt |
113 |
Q |
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| T |
52770881 |
agaaggaattgagaagacaacaagcacctggttcttgtccttactgtggtggcaaagttgaagccatggatgttgaggttcaatccaagctctgcttttt |
52770782 |
T |
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| Q |
114 |
gcctatgtgttttaagatcaagagga |
139 |
Q |
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|||||||| ||| |||||||||||| |
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| T |
52770781 |
acctatgtgctttcagatcaagagga |
52770756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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