View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_23 (Length: 307)
Name: NF9392_low_23
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 7809950 - 7809680
Alignment:
| Q |
7 |
tttggtgttgacctcttaattatttttcctcttaatatactcagctcaaatgttttgacttaattttaaaaatgacaccnnnnnnngaaggagaaaatga |
106 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
7809950 |
tttgatgttgacctcttaattatttttcctcttcatatactcagctcaaatgttttgacttaattttaaaaatgacacctttttttgaaggaaaaaatga |
7809851 |
T |
|
| Q |
107 |
cacctaaattaagtatgtacatataattcataaatacatgtgtagaaaaagctccatagcgataataatcaaataattgaaataatacatggagccatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7809850 |
cacctaaattaagtatgtacatataattcataaatacatgtgtagaaaaagctccatagcgataataatcaaataattgaaacaatacatggagccatgt |
7809751 |
T |
|
| Q |
207 |
ggtaatggggagaacaaaatgaattttctttcccatttatatatcgacatgcatgatttgttgacatggtt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7809750 |
ggtaatggggagaacaaaatgaattttctttcccatttatatatcgacatgcatgatctgttgacatggtt |
7809680 |
T |
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