View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_3 (Length: 494)
Name: NF9392_low_3
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 1035557 - 1035082
Alignment:
| Q |
19 |
ccttggtcttgtctcgacaagtttcacttcctgaagtcacgtttagccgtgtaagaagccacctgaaacctttagctgtttctatcccaaatatgatgga |
118 |
Q |
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| T |
1035557 |
ccttggtcttgtctcgactagtttcacttcctgaagtcacgtttagccgtgtaagaagccacctgaaacctttagctgtttctatcccaaatatgatgga |
1035458 |
T |
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| Q |
119 |
aaaggcaacaagaaataaccctgcagaactccaattatttaaaagctcatcctatcaattcatccctgcatagactgcgataattacacacacatatatg |
218 |
Q |
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| T |
1035457 |
aaaggcaacaaggaataaccctgcagaactccaattatttaaaagctcatcctatcaattcatccctgcatagactgcgataattacacacacatatatg |
1035358 |
T |
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| Q |
219 |
gaaggtatcagatttcatcgctataatacttgattattgttacactcatcagaaactttttataagacacctgtattacaaaacttactatctgattgaa |
318 |
Q |
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| T |
1035357 |
gaaggtatcagatttcattgctataatacttgattattgttacactcatcagaaactttttataagacacctgtattataaaacttactatctgattgaa |
1035258 |
T |
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| Q |
319 |
agtttatattatatagataatttgtgtaaaattttatgcaaatgtaaaaacatttgatacatcattgatatatgccgagattaacgtcttttaataaaag |
418 |
Q |
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| T |
1035257 |
agtttatattatatagatcatttgtgtaaaattttatgcaaatgtaaaaagatttgatacatcattgatatatgtcgagactaacgtcttttaataaaag |
1035158 |
T |
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| Q |
419 |
tgcatacaaagttaactgtaaagaccaatgtaatttgatcccttatctggttctcgtataaaagcgcaaaggaact |
494 |
Q |
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| T |
1035157 |
tgcatacaaagttaactgtaaagaccaatgtaatttgatcccttatctggttctcgtataaaagtgcaaaggaact |
1035082 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 2101332 - 2101377
Alignment:
| Q |
294 |
ttacaaaacttactatctgattgaaagtttatattatatagataat |
339 |
Q |
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| T |
2101332 |
ttacaaaactcactatttgattgatagtttatatcatatagataat |
2101377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 50403961 - 50403997
Alignment:
| Q |
318 |
aagtttatattatatagataatttgtgtaaaatttta |
354 |
Q |
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| T |
50403961 |
aagtttatattatatagattatttatgtaaaatttta |
50403997 |
T |
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