View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9392_low_34 (Length: 235)

Name: NF9392_low_34
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9392_low_34
NF9392_low_34
[»] chr7 (1 HSPs)
chr7 (1-225)||(29622335-29622559)
[»] chr5 (4 HSPs)
chr5 (16-134)||(35386889-35387002)
chr5 (4-79)||(35371365-35371440)
chr5 (30-85)||(23935870-23935925)
chr5 (6-53)||(35411525-35411572)
[»] chr3 (1 HSPs)
chr3 (4-85)||(1154539-1154620)
[»] chr2 (3 HSPs)
chr2 (4-93)||(30626907-30626996)
chr2 (4-93)||(30663833-30663922)
chr2 (4-93)||(30672513-30672602)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29622559 - 29622335
Alignment:
Q  1 ctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgcgttgcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622559 ctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgcgttgcta 29622460  T
Q  101 ctgtgataagaaaataattgtgttcacaagaaaggttgagtagtctgtagccataaatcaagtgtgtgattgttattgttgcgatactataaattaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29622459 ctgtgataagaaaataattgtgttcacaagaaaggttgagtagtctgtagccataaatcaagtgtgtgattgttattgttgcgatactatgaattaaaat 29622360  T
Q  201 ttctgtgtataataatttgtatttg 225  Q
    |||||||||||||||| ||||||||    
T  29622359 ttctgtgtataataatctgtatttg 29622335  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 35386889 - 35387002
Alignment:
Q  16 ctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgcgttgctactgtgataagaaaat 115  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       || ||||||||||||||||||||    
T  35386889 ctcatcgaatgttgataaaagatgttatagttaagttgaatcaaatcaaatcaaagtttccatgctagga-----accgctgctactgtgataagaaaat 35386983  T
Q  116 aattgtgttcacaagaaag 134  Q
    |||||||||||||||||||    
T  35386984 aattgtgttcacaagaaag 35387002  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 35371365 - 35371440
Alignment:
Q  4 aagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatg 79  Q
    |||||| |||||||||||||||| | |||||||||| ||||| ||| ||||||||||||||||||| |||||||||    
T  35371365 aagagtctcctgctcatcgaatgttgataaaagatgctatagctaatttgaatgaaatcaaatcaatgtttccatg 35371440  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 23935925 - 23935870
Alignment:
Q  30 ataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 85  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  23935925 ataaaagatgttacagttaagttgagtgaaataaaatcaaagtttccatgctagga 23935870  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 35411525 - 35411572
Alignment:
Q  6 gagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 53  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||||    
T  35411525 gagtttcctgctcatcgaatgttgataaaagatgttatcgttaagttg 35411572  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 1154539 - 1154620
Alignment:
Q  4 aagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 85  Q
    ||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  1154539 aagagtttcctgctcatcgaatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctagga 1154620  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 30626907 - 30626996
Alignment:
Q  4 aagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgc 93  Q
    ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||    
T  30626907 aagagtttccatctaatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgctaggatccgttgc 30626996  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 30663833 - 30663922
Alignment:
Q  4 aagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgc 93  Q
    ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  30663833 aagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgcgaggatccgttgc 30663922  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 30672513 - 30672602
Alignment:
Q  4 aagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgc 93  Q
    ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  30672513 aagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgcgaggatccgttgc 30672602  T

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