View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_36 (Length: 230)
Name: NF9392_low_36
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 6632284 - 6632461
Alignment:
| Q |
36 |
gtagcggaagagaaaattgctttggtctcccttaaagtttatcaaaaaacaatcactccccctctgatttgnnnnnnncacttaccttccctcaatgttc |
135 |
Q |
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| T |
6632284 |
gtagcggaagagaaaattgcattggtctcccttaaagtttatcaaaaaacaatcactcgccctctgatttgaaaaaaacacttaccttccctcaatgttc |
6632383 |
T |
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| Q |
136 |
actatgatagtcacagttaagaaattttttaactttctttcttgtgatacctcctcgataattagaacacattactta |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6632384 |
actataatagtcacagttaagaaattttttaactttctttcttgtgatacctcctccataattagaacacattactta |
6632461 |
T |
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