View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_4 (Length: 458)
Name: NF9392_low_4
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 39 - 416
Target Start/End: Original strand, 37963669 - 37964046
Alignment:
| Q |
39 |
aacggcgctttaccgttacaagaagaaatgaaatggtctgagtatcttaacacaccatttcttatgcagaatcaaccttctccatcaatgtacactgaag |
138 |
Q |
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| T |
37963669 |
aacggcgctttacctttacaagaagaaatgaaatggtctgagtatcttaacacaccatttcttatgcagaatcaaccttctccatcaatgtacactgaag |
37963768 |
T |
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| Q |
139 |
ctaaaccagaaacaggtttcataacagatgaatcatgtactagttggcagcagcagcaacaacaaaattttcaactttctgatatatatagcaaggatct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37963769 |
ctaaaccagaaacaggtttcataacagatgaatcatgtactagttggcagcagcagcaacaacaaaattttcaactttctgatatatatagcaaggatct |
37963868 |
T |
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| Q |
239 |
gcagagattttcagtggcttttggacaaagtatgtagtctgaaagagacaaagatggtgatggataaatttcctatatgaactatataggtcagaagttt |
338 |
Q |
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| T |
37963869 |
gcagagattttcagtggcttttggacaaagtatgtagtctgaaagagacaaagatggtgatggataaatttcctatatgaactatataggtcagaagttt |
37963968 |
T |
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| Q |
339 |
cttatgtttctgaccacaggtgtgtgctgtaaatttcccttttgataaatcttccatattgtatatgtgtctgatacc |
416 |
Q |
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| T |
37963969 |
cttatgtttctgaccacaggtgtgtgctgtaaatttcccttttgataaatcttccatattgtatatgtgtctgatacc |
37964046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 374
Target Start/End: Complemental strand, 45674871 - 45674843
Alignment:
| Q |
346 |
ttctgaccacaggtgtgtgctgtaaattt |
374 |
Q |
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| T |
45674871 |
ttctgaccacaggtgtgtgctgtaaattt |
45674843 |
T |
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