View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9392_low_5 (Length: 416)
Name: NF9392_low_5
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 214 - 405
Target Start/End: Complemental strand, 45340527 - 45340336
Alignment:
| Q |
214 |
agacattatgagatgatatatgcttctatcattttcctttttgtgtacattcattaatattgaactgtacaagcattgagtattagcacggtatgaaaag |
313 |
Q |
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| T |
45340527 |
agacattatgagatgatatatgcttctatcattttcctttttgtgtacattcattaatattgaactgtacaagcattgagtattagcacggtatgaaaag |
45340428 |
T |
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| Q |
314 |
ttcattgcagctaccattcaagaaaataaatgatgctaaaataagtctcctttaattccctgtcccctttgaaaaaattaggtaattattat |
405 |
Q |
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| T |
45340427 |
ttcattgcagctaccattcaagaaaataaatgatgctaaaataagtctcctttaattccctgtcccctttgaaaaaattaggtaattattat |
45340336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 45340741 - 45340561
Alignment:
| Q |
1 |
tcacatattataggtatgatcactttcatgtgacacgtgatgaatggatctatagatgaaaggtgacgatgagaaaatgaatgttgtgcttattacaa-n |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
45340741 |
tcacatattataggtatgatcactttcatgtgacacgtgatgaatggatctatagatgaaaggtgacgatgagaacatgaatattgtgcttattacaatt |
45340642 |
T |
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| Q |
100 |
nnnnnngatgatagattggattagattggaaacatgtggggactgaggaggagaggatataaagttccaggcccaacaatg |
180 |
Q |
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| T |
45340641 |
ttttttgatgatagattggattagattggaaacatgtggggactgaggaggagaggatataaagttccaggcccaacaatg |
45340561 |
T |
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