View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9392_low_8 (Length: 400)
Name: NF9392_low_8
Description: NF9392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9392_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 1034705 - 1035092
Alignment:
| Q |
10 |
gtttggtgttgtattcaaagaagacatatcaaatgtgtccaagtatctggctgttgcactgacaactggttacttagggagtctaacaacattcagcggc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034705 |
gtttggtgttgtattcaaagaagacatatcaaatgtgtccaagtatctggctgttgcactgacaactggttacttagggagtctaacaacattcagcggc |
1034804 |
T |
|
| Q |
110 |
tggaatcagaaaatgcttgaactcagtgttactgggaattggctctttgttgtgcttggctttctaataggtaa-gttaagaaggaaagtttgataagta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1034805 |
tggaatcagaaaatgcttgaactcagtgttactgggaattggctctttgttgtgcttggctttctaataggtaatgttaagaaggaaagtttgataagta |
1034904 |
T |
|
| Q |
209 |
tgttttagtggtatggttttctcattcaaaacttgtctgttatgactctttcacttcacattcaannnnnnnnnnnnnagagaggatcaaattacatcag |
308 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1034905 |
tgttttagtggtat-gttttctcattcaaaacttgtctgttatgactctttcacttcacattcaatgtgtgtgtgtgtagagaggatcaaattacatcag |
1035003 |
T |
|
| Q |
309 |
tgtaatacttagatattgtcatactgttcaataactttttatcggatatctatatgcaaaactcattgttggattgaaagttcctttgc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1035004 |
tgtaatacttagatattgtcatactgttcaataactttttatcggatatctatatgcaaaactcattgttggattgaaagttcctttgc |
1035092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 32778150 - 32778023
Alignment:
| Q |
10 |
gtttggtgttgtattcaaagaagacatatcaaatgtgtccaagtatctggctgttgcactgacaactggttacttagggagtctaacaacattcagcggc |
109 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||| || |||| || || || | |||||||||||||| ||||| || ||||| ||||| || |
|
|
| T |
32778150 |
gtttggtgttgtatacaaaaaagacatatctaatgtgtcagagcatctagccgtagctataacaactggttacttggggagccttacaaccttcagtggt |
32778051 |
T |
|
| Q |
110 |
tggaatcagaaaatgcttgaactcagtg |
137 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
32778050 |
tggaatcaaaaaatgcttgaactcagtg |
32778023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 32782550 - 32782495
Alignment:
| Q |
71 |
acaactggttacttagggagtctaacaacattcagcggctggaatcagaaaatgct |
126 |
Q |
| |
|
||||| || ||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
32782550 |
acaaccggctacttggggagcctaacaactttcagcggctggaatcagaaaatgct |
32782495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University