View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9393_high_3 (Length: 218)

Name: NF9393_high_3
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9393_high_3
NF9393_high_3
[»] chr2 (11 HSPs)
chr2 (21-205)||(6828573-6828757)
chr2 (21-128)||(7323248-7323355)
chr2 (27-194)||(7309035-7309202)
chr2 (22-90)||(7370877-7370945)
chr2 (21-131)||(7342192-7342302)
chr2 (49-174)||(7365838-7365963)
chr2 (27-174)||(7348687-7348834)
chr2 (24-205)||(7303669-7303850)
chr2 (43-156)||(7327358-7327471)
chr2 (21-134)||(7337001-7337114)
chr2 (49-89)||(7332792-7332832)
[»] chr6 (1 HSPs)
chr6 (27-130)||(13246188-13246291)
[»] chr3 (1 HSPs)
chr3 (27-124)||(39576907-39577004)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 6828757 - 6828573
Alignment:
Q  21 cttcacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatc 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6828757 cttcacgaattgagaatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtactgttcaattcaaccctataaaggatttcaatc 6828658  T
Q  121 atcacttcctccggaataatcgtagtcggtgactccacggttgcttccgccatcttgcgccgtcgactccgcgtcatcaccacca 205  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6828657 atcacttcctccgggagaatcgtagtcggtgactccacggttgcttccgccatcttgcgccgtcgactccgcgtcatcaccacca 6828573  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 7323248 - 7323355
Alignment:
Q  21 cttcacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatc 120  Q
    |||| |||||||||||||| |||| ||||| |||||||| |||||||| ||||||||||||||||||||| |  | ||||| ||| |||||||||| |||    
T  7323248 cttcgcgaattgaggatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtattgcttgaatcaactctagaaaggatttcgatc 7323347  T
Q  121 atcacttc 128  Q
    ||||||||    
T  7323348 atcacttc 7323355  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 7309035 - 7309202
Alignment:
Q  27 gaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatcact 126  Q
    |||||||| |||| |||  ||||| |||||||| |||||||||||||||||||  |||| ||||||  ||||||||||  ||||||||||||||||||      
T  7309035 gaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcatcaaa 7309134  T
Q  127 tcctccggaataatcgtag-tcggtgactccacggttgcttccgccatcttgcgccgtcgactccgcgt 194  Q
    |||||||| |  | || || ||||||||||| | ||||||||  ||||| |||||||| | ||||||||    
T  7309135 tcctccgggagta-cggagctcggtgactccgccgttgcttcttccatcatgcgccgttggctccgcgt 7309202  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 7370877 - 7370945
Alignment:
Q  22 ttcacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattg 90  Q
    ||||||||||||| |||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  7370877 ttcacgaattgagaatcaagaactagcgaattccacaacttgcaaacacacctcaattgcagagtattg 7370945  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 7342192 - 7342302
Alignment:
Q  21 cttcacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatc 120  Q
    ||||| ||||||||||| | |||  |||||||||||||| ||| |||| ||||||| ||||||||||  | |  | ||||||||| ||||||||||||||    
T  7342192 cttcaagaattgaggattaagaattagcgatttccacaacttggaaacgcacctcagttgcagagtaacgcttgactcaaccctagaaaggatttcaatc 7342291  T
Q  121 atcacttcctc 131  Q
    |||| ||||||    
T  7342292 atcaattcctc 7342302  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 7365838 - 7365963
Alignment:
Q  49 gatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatcacttcctccggaataatcgtagtcg 148  Q
    ||||||||| | ||||| ||  ||||||| ||||||| ||||||  | ||||| |||  ||||||||| ||||||| |||| |||| | |||||| ||||    
T  7365838 gatttccaccacttgcatactgacctcaactgcagaggattgtttgagtcaactctagcaaggatttcgatcatcagttccaccgggagaatcgtggtcg 7365937  T
Q  149 gtgactccacggttgcttccgccatc 174  Q
    |||||||| | ||||| |||||||||    
T  7365938 gtgactccgccgttgcatccgccatc 7365963  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 7348687 - 7348834
Alignment:
Q  27 gaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatcact 126  Q
    |||||||| ||||  ||| || ||||||||||| |||||||||||||| |||| | ||| |||| |  | ||||| ||| |||||||||| |||||||      
T  7348687 gaattgagtatcaaaaactagtgatttccacaacttgcaaacacaccttaattcctgaggattgcttgactcaactctagaaaggatttcgatcatcaac 7348786  T
Q  127 tcctccggaataatcgtagtcggtgactccacggttgcttccgccatc 174  Q
    |||||||| | ||| ||  ||||||||||| | ||  |||||||||||    
T  7348787 tcctccgggagaattgtgttcggtgactccgccgtgacttccgccatc 7348834  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 7303669 - 7303850
Alignment:
Q  24 cacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatc 123  Q
    ||||||||||||||||  | |||  ||||||||||| |||||||| | ||||| ||||| ||||| | | |  ||||||||  |||  ||||||| ||||    
T  7303669 cacgaattgaggatcaacagccaaagatttccacaacttgcaaacgcccctcagttgcatagtatcgcttatctcaaccctggaaaaaatttcaagcatc 7303768  T
Q  124 acttcctccggaataatcgtagtcggtgactccacggttgcttccgccatcttgcgccgtcgactccgcgtcatcaccacca 205  Q
    | ||| ||||| | ||| ||| | ||||||||  |  | ||||||||||||||| || || | ||||| |||||||||||||    
T  7303769 atttcatccgggagaattgtaatgggtgactcggctatagcttccgccatcttgtgctgttggctccgtgtcatcaccacca 7303850  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 7327358 - 7327471
Alignment:
Q  43 accagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatcacttcctccggaataatcg 142  Q
    ||||| ||||||| ||  |||||||| ||||||| |||||||| |||| || |||||||| || |||||||||| ||||||| ||| | ||| || || |    
T  7327358 accagagatttccgcagcttgcaaacgcacctcatttgcagaggattgctcgattcaaccatacaaaggatttcgatcatcagttcattcgggatcatag 7327457  T
Q  143 tagtcggtgactcc 156  Q
    |  |||||||||||    
T  7327458 tgatcggtgactcc 7327471  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 7337001 - 7337114
Alignment:
Q  21 cttcacgaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatc 120  Q
    ||||| |||||| |||||| |||  | ||| |||||||| |||||||||||| ||||||| | || |||| |  ||||||||||| |||||||||| ||     
T  7337001 cttcatgaattgcggatcaagaattaacgaattccacaacttgcaaacacacatcaattgaaaaggattgcttgattcaaccctaaaaaggatttcgata 7337100  T
Q  121 atcacttcctccgg 134  Q
    |||| ||| |||||    
T  7337101 atcagttcatccgg 7337114  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 7332792 - 7332832
Alignment:
Q  49 gatttccacaatttgcaaacacacctcaattgcagagtatt 89  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  7332792 gatttccacaacttgcaaacgcacctcaattgcagagtatt 7332832  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 13246188 - 13246291
Alignment:
Q  27 gaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatcact 126  Q
    ||||| |||||||  ||||||||||||| |  | |||||||| ||||| ||||| |||||||||||||| ||| | ||| ||||||| |||||||||| |    
T  13246188 gaattcaggatcaacaaccagcgatttctatgacttgcaaacgcaccttaattggagagtattgttcaaatcatctctagaaaggatgtcaatcatcagt 13246287  T
Q  127 tcct 130  Q
    ||||    
T  13246288 tcct 13246291  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 39576907 - 39577004
Alignment:
Q  27 gaattgaggatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtattgttcaattcaaccctataaaggatttcaatcatca 124  Q
    |||||||||||||  ||  ||||| |||||||| |||||||||||||| ||||| |||| |||||   | || |||||  |||||||||| |||||||    
T  39576907 gaattgaggatcaacaaggagcgacttccacaacttgcaaacacaccttaattgtagaggattgtctgactccaccctcaaaaggatttcgatcatca 39577004  T

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